COG0295


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0295, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Cytidine deaminase
Function(s) descr. Nucleotide transport and metabolism (F)

Occurence in the database

COG0295 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1181 FBDBKF_06810 25548 26432 -1 cdd cytidine deaminase Morganella morganii S1
1 group_1181 EHELCC_04160 159754 160638 1 cdd cytidine deaminase Morganella morganii S2
2 group_1181 NLDBIP_04160 159550 160434 1 cdd cytidine deaminase Morganella morganii S4
3 group_1181 LHKJJB_09990 159664 160548 1 cdd cytidine deaminase Morganella morganii S3
4 group_1181 HKOGLL_08985 30504 31388 -1 cdd cytidine deaminase Morganella morganii S5
5 group_1181 F4V73_RS00950 202296 203180 -1 cdd cytidine deaminase Morganella psychrotolerans
6 group_1181 PMI_RS03170 699839 700723 -1 cdd cytidine deaminase Proteus mirabilis HI4320