Homologs in group_108

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10 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00215 FBDBKF_00215 30.1 Morganella morganii S1 ninB Recombination protein NinB
FBDBKF_11300 FBDBKF_11300 31.3 Morganella morganii S1 ninB NinB protein
EHELCC_01330 EHELCC_01330 30.1 Morganella morganii S2 ninB Recombination protein NinB
EHELCC_17915 EHELCC_17915 31.3 Morganella morganii S2 ninB NinB protein
NLDBIP_02130 NLDBIP_02130 30.1 Morganella morganii S4 ninB Recombination protein NinB
NLDBIP_05245 NLDBIP_05245 31.3 Morganella morganii S4 ninB NinB protein
LHKJJB_02125 LHKJJB_02125 31.3 Morganella morganii S3 ninB NinB protein
LHKJJB_03645 LHKJJB_03645 30.1 Morganella morganii S3 ninB Recombination protein NinB
HKOGLL_03400 HKOGLL_03400 30.1 Morganella morganii S5 ninB Recombination protein NinB
HKOGLL_15505 HKOGLL_15505 31.3 Morganella morganii S5 ninB NinB protein

Distribution of the homologs in the orthogroup group_108

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_108

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47269 3.67e-09 55 25 3 153 4 ybcN Uncharacterized protein YbcN Escherichia coli (strain K12)
Q37870 9.27e-09 54 24 3 153 4 None Uncharacterized protein in rusA 5'region Enterobacteria phage 82

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02405
Feature type CDS
Gene -
Product YbcN family protein
Location 540533 - 540982 (strand: 1)
Length 450 (nucleotides) / 149 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_108
Orthogroup size 11
N. genomes 6

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Genomic region

Protein Sequence

MTDDICLHKSNLNSIFKVLSEIVTTGKRYRIKITEWRDLRTIPMNKTWRMWMETTGEWLRARGVVIDIKNGVGEIVLSKPITNEETHEYFVGHWLGRNENGEREETSKMDKARMLYMMEKHEQWCIEKGIPIIIPRNSEYMSLKRKQEE

Flanking regions ( +/- flanking 50bp)

AAGGTATTGTGAAAAATCGTTTTAACTCATGAAAGTAAAAAGGAGACCTCGTGACAGATGATATCTGTCTCCATAAATCCAATCTCAACAGTATTTTCAAAGTGCTCTCCGAAATCGTGACAACAGGTAAACGCTATCGCATCAAAATCACCGAGTGGCGTGATTTAAGAACCATACCCATGAATAAAACATGGCGTATGTGGATGGAAACCACAGGCGAGTGGTTACGTGCACGTGGCGTTGTTATCGATATTAAAAATGGTGTCGGTGAAATCGTTTTATCAAAGCCCATTACTAATGAGGAAACGCATGAATATTTCGTTGGACACTGGTTAGGGCGCAATGAAAACGGTGAGCGTGAAGAAACCAGCAAGATGGATAAAGCAAGGATGCTTTACATGATGGAGAAACATGAACAATGGTGCATTGAGAAGGGAATTCCGATCATCATTCCTCGTAACTCTGAATATATGAGTTTGAAAAGAAAGCAAGAAGAATAGGAAATAGTGATGATTATTTCAGTTAATAACATGATCGTTTTTATTTTAAA