Homologs in group_104

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10 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00215 FBDBKF_00215 100.0 Morganella morganii S1 ninB Recombination protein NinB
FBDBKF_11300 FBDBKF_11300 50.0 Morganella morganii S1 ninB NinB protein
EHELCC_01330 EHELCC_01330 100.0 Morganella morganii S2 ninB Recombination protein NinB
EHELCC_17915 EHELCC_17915 50.0 Morganella morganii S2 ninB NinB protein
NLDBIP_02130 NLDBIP_02130 100.0 Morganella morganii S4 ninB Recombination protein NinB
NLDBIP_05245 NLDBIP_05245 50.0 Morganella morganii S4 ninB NinB protein
LHKJJB_02125 LHKJJB_02125 50.0 Morganella morganii S3 ninB NinB protein
HKOGLL_03400 HKOGLL_03400 100.0 Morganella morganii S5 ninB Recombination protein NinB
HKOGLL_15505 HKOGLL_15505 50.0 Morganella morganii S5 ninB NinB protein
PMI_RS02405 PMI_RS02405 30.1 Proteus mirabilis HI4320 - YbcN family protein

Distribution of the homologs in the orthogroup group_104

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_104

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47269 4.37e-43 142 48 0 142 4 ybcN Uncharacterized protein YbcN Escherichia coli (strain K12)
Q37870 8.61e-43 141 47 0 142 4 None Uncharacterized protein in rusA 5'region Enterobacteria phage 82

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_03645
Feature type CDS
Gene ninB
Product Recombination protein NinB
Location 11592 - 12035 (strand: -1)
Length 444 (nucleotides) / 147 (amino acids)
In genomic island -

Contig

Accession ZDB_361
Length 286024 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_104
Orthogroup size 11
N. genomes 6

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Genomic region

Domains

PF05772 NinB protein

Protein Sequence

MENFCLHESNKKLFYEQLKSLLSTHPKLSITAKPYRPKRSLSQNALSHVWYKEISDYLIRAGRPFCTEAWVKESLKATYLGFETTEYTDVITGEKTQRETLRRTSKLDKGDMHYFLQQVESWAAQFGLILTTPEDSEYMKLKREQDA

Flanking regions ( +/- flanking 50bp)

GACAAAGTCGTCCTGACTGATTTTAAGTGTGAGAAGGAGTAGGGGGTAATGTGGAAAACTTCTGCCTGCATGAATCCAACAAAAAACTGTTTTACGAGCAACTGAAATCACTACTGAGCACCCACCCGAAGTTAAGTATCACCGCAAAACCCTACCGCCCGAAACGAAGCCTTTCACAAAATGCACTCAGCCATGTCTGGTACAAAGAAATCAGCGATTATCTGATTCGTGCCGGCCGGCCGTTTTGCACTGAAGCATGGGTGAAAGAAAGCCTGAAGGCGACATACCTCGGATTTGAAACCACTGAGTACACCGATGTTATCACCGGCGAAAAAACGCAGCGTGAGACGCTCAGGCGCACTTCAAAACTGGATAAAGGGGATATGCATTACTTTCTTCAGCAAGTCGAATCATGGGCTGCACAGTTCGGTTTAATACTGACTACACCGGAGGATTCGGAGTACATGAAACTCAAAAGGGAGCAGGACGCATGAAAGAACCTCACATACACCAGCTTCTCACCAATGACGAAGCCGATAACCTC