Homologs in group_1544

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10005 FBDBKF_10005 56.9 Morganella morganii S1 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains
EHELCC_04805 EHELCC_04805 56.9 Morganella morganii S2 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains
NLDBIP_04805 NLDBIP_04805 56.9 Morganella morganii S4 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains
LHKJJB_13825 LHKJJB_13825 56.9 Morganella morganii S3 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains
HKOGLL_12710 HKOGLL_12710 56.9 Morganella morganii S5 dsbD Thiol-disulfide interchange protein, contains DsbC and DsbD domains
F4V73_RS00330 F4V73_RS00330 56.8 Morganella psychrotolerans - protein-disulfide reductase DsbD family protein

Distribution of the homologs in the orthogroup group_1544

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1544

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9CP40 4.34e-28 122 30 12 381 3 dsbD Thiol:disulfide interchange protein DsbD Pasteurella multocida (strain Pm70)
Q0SXE3 1.43e-24 112 27 21 489 3 dsbD Thiol:disulfide interchange protein DsbD Shigella flexneri serotype 5b (strain 8401)
Q1R3C4 1.55e-24 112 27 21 489 3 dsbD Thiol:disulfide interchange protein DsbD Escherichia coli (strain UTI89 / UPEC)
Q0T9Q5 1.55e-24 112 27 21 489 3 dsbD Thiol:disulfide interchange protein DsbD Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q3YUK4 2.26e-24 111 27 21 489 3 dsbD Thiol:disulfide interchange protein DsbD Shigella sonnei (strain Ss046)
Q31T72 5.14e-24 110 27 21 488 3 dsbD Thiol:disulfide interchange protein DsbD Shigella boydii serotype 4 (strain Sb227)
Q8CVH5 6.67e-24 110 27 21 489 3 dsbD Thiol:disulfide interchange protein DsbD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P36655 1.36e-23 108 27 20 487 1 dsbD Thiol:disulfide interchange protein DsbD Escherichia coli (strain K12)
A8AMR4 1.39e-23 108 28 14 380 3 dsbD Thiol:disulfide interchange protein DsbD Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q328D2 1.41e-23 108 27 21 489 1 dsbD Thiol:disulfide interchange protein DsbD Shigella dysenteriae serotype 1 (strain Sd197)
A5UI29 3.06e-23 108 26 15 400 3 dsbD Thiol:disulfide interchange protein DsbD Haemophilus influenzae (strain PittGG)
P44919 4.15e-23 107 27 17 401 3 dsbD Thiol:disulfide interchange protein DsbD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P58162 6.61e-23 107 27 21 489 1 dsbD Thiol:disulfide interchange protein DsbD Escherichia coli O157:H7
Q9KNN1 7.27e-23 107 29 21 451 3 dsbD Thiol:disulfide interchange protein DsbD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A3N207 6.98e-22 103 28 16 398 3 dsbD Thiol:disulfide interchange protein DsbD Actinobacillus pleuropneumoniae serotype 5b (strain L20)
Q15ZS2 7.43e-22 103 27 16 394 3 dsbD Thiol:disulfide interchange protein DsbD Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q7VMZ4 1.22e-21 103 29 14 387 3 dsbD Thiol:disulfide interchange protein DsbD Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q5QVU3 2.11e-21 102 26 9 380 3 dsbD Thiol:disulfide interchange protein DsbD Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
A6TH46 4e-21 101 28 16 393 3 dsbD Thiol:disulfide interchange protein DsbD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A5UDI9 6.75e-21 100 25 14 384 3 dsbD Thiol:disulfide interchange protein DsbD Haemophilus influenzae (strain PittEE)
Q87KW0 7.6e-21 100 26 16 462 3 dsbD Thiol:disulfide interchange protein DsbD Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q4QM23 8.34e-21 100 26 16 385 3 dsbD Thiol:disulfide interchange protein DsbD Haemophilus influenzae (strain 86-028NP)
A7MMC7 1.28e-20 99 27 14 387 3 dsbD Thiol:disulfide interchange protein DsbD Cronobacter sakazakii (strain ATCC BAA-894)
Q487R3 1.99e-20 99 26 15 365 3 dsbD Thiol:disulfide interchange protein DsbD Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Q8ZKC3 2.85e-20 98 27 15 396 3 dsbD Thiol:disulfide interchange protein DsbD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PIQ0 3.08e-20 98 27 14 380 3 dsbD Thiol:disulfide interchange protein DsbD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A4TRR6 7.21e-20 97 26 13 398 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia pestis (strain Pestoides F)
Q1CEC8 7.21e-20 97 26 13 398 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia pestis bv. Antiqua (strain Nepal516)
Q8ZIY9 7.21e-20 97 26 13 398 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia pestis
Q1C0X4 7.21e-20 97 26 13 398 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia pestis bv. Antiqua (strain Antiqua)
Q8Z1A8 1.03e-19 97 27 14 380 3 dsbD Thiol:disulfide interchange protein DsbD Salmonella typhi
Q66FE1 3.03e-19 95 25 13 398 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia pseudotuberculosis serotype I (strain IP32953)
Q57GQ5 1.71e-18 93 27 13 379 3 dsbD Thiol:disulfide interchange protein DsbD Salmonella choleraesuis (strain SC-B67)
Q9KJZ3 9.17e-18 90 26 15 384 3 dsbD Thiol:disulfide interchange protein DsbD Pseudomonas sp. (strain JR1 / K1)
Q6D9J6 1.54e-17 90 28 18 392 3 dsbD Thiol:disulfide interchange protein DsbD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
Q8XV41 3.48e-17 89 27 17 377 3 dsbD Thiol:disulfide interchange protein DsbD Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q8DCZ0 5.92e-17 88 26 16 388 3 dsbD Thiol:disulfide interchange protein DsbD Vibrio vulnificus (strain CMCP6)
Q7MGV6 1.07e-16 87 26 16 388 3 dsbD Thiol:disulfide interchange protein DsbD Vibrio vulnificus (strain YJ016)
A1JIN7 3.84e-16 85 26 14 379 3 dsbD Thiol:disulfide interchange protein DsbD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q9JYM0 1.24e-14 80 26 15 397 1 dsbD Thiol:disulfide interchange protein DsbD Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q7MZX2 2.67e-14 80 25 14 381 3 dsbD Thiol:disulfide interchange protein DsbD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2NW99 1.06e-13 78 30 17 364 3 dsbD Thiol:disulfide interchange protein DsbD Sodalis glossinidius (strain morsitans)
Q9JTL9 2.82e-13 76 25 15 397 3 dsbD Thiol:disulfide interchange protein DsbD Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q4K909 7.61e-13 75 24 16 410 3 dsbD Thiol:disulfide interchange protein DsbD Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q9XDB2 1.01e-12 75 26 13 381 3 dsbD Thiol:disulfide interchange protein DsbD Tatumella citrea
Q5HVG7 3.26e-10 67 27 18 340 3 dsbD Thiol:disulfide interchange protein DsbD Campylobacter jejuni (strain RM1221)
Q9PHR3 3.26e-10 67 27 18 340 3 dsbD Thiol:disulfide interchange protein DsbD Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q9I104 1.48e-09 64 27 16 399 3 dsbD2 Thiol:disulfide interchange protein DsbD 2 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9HUW5 1.56e-08 61 28 5 208 3 dsbD1 Thiol:disulfide interchange protein DsbD 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P9WG62 6.33e-05 50 24 8 233 4 dipZ Protein DipZ Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P59960 6.33e-05 50 24 8 233 4 dipZ Protein DipZ Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WG63 7.14e-05 49 24 8 233 1 dipZ Protein DipZ Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02165
Feature type CDS
Gene -
Product protein-disulfide reductase DsbD family protein
Location 506477 - 508513 (strand: 1)
Length 2037 (nucleotides) / 678 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1544
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02683 Cytochrome C biogenesis protein transmembrane region
PF11412 Thiol:disulfide interchange protein DsbD, N-terminal
PF13899 Thioredoxin-like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4232 Posttranslational modification, protein turnover, chaperones (O) O Thiol:disulfide interchange protein DsbD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08344 suppressor for copper-sensitivity B - -

Protein Sequence

MVRSFLIALMLMLFSLSSLAADTGWLTMPDNDHAQVRATADKSSTGDVKILLEVQLAPGWKTYWRSPGEGGVAPEINWTQSVSDMIWHWPSPSAFDVAGIHTQGYDKEVVFPIELKSVDSDNLNGVLTLSTCSNVCILTDYSLNLDLNEPAPADFEWQYNQAMAKVPVTSGLISAVSSDYRNSQLTLSLQREQGDWHQPNIYLDPPQGMLYGIPQLTAKGDHLSVTVDVTDDWGDAAGDITGKALSFVVTDDGYSRQVNDTIGQGDSASLPTADSGVGLWSILAFALLGGLILNLMPCVLPVLAMKLGSILHIEKRDTGAIRKQFSVSVVGILVSFWALALFMTVLRYSQEAIGWGIQFQSPWFIGFMVLITAIFTANLFGLFELRLSSNMNTKIATAGGQGYSRHFWEGAFATLLATPCSAPFLGTAVAYALIAPLSELWLIFTALGLGMSLPWIMVAMFPSIAKVLPKPGKWMNRLRVVLGFMMLLSCIWLITLLIPHFGIGIVAAIFVAIALILLFAIAKHYGKKTLFASMVITLILGGTSYLFIAQPDTQTLAGQDHVNWQPLSEEAIHQALAENKRVFIDVTADWCVTCKANKYNVLLRDDVQKALSEPDVVALRGDWTKPSEQITQFLKQRGQVAVPFNQIYGPCNKEGEILPPLLNKDLMLTILSEAKGAQ

Flanking regions ( +/- flanking 50bp)

TTGAGGCGTTGTTTTATGTGTAGCGTTAGAGGATTTTTTAGGGAGTTGCTATGGTTCGTTCTTTTTTAATAGCATTGATGTTGATGCTATTTTCATTATCTTCATTAGCCGCCGATACAGGTTGGCTAACTATGCCAGACAATGATCATGCTCAGGTTAGGGCTACGGCTGACAAGTCATCGACAGGCGATGTTAAAATATTGCTTGAGGTGCAATTAGCGCCGGGCTGGAAAACATATTGGCGCTCTCCCGGAGAAGGTGGCGTAGCACCTGAAATTAATTGGACGCAATCTGTGTCTGATATGATATGGCATTGGCCATCACCTTCCGCTTTTGATGTCGCAGGTATTCATACCCAAGGTTACGATAAAGAAGTCGTCTTCCCCATTGAACTAAAATCTGTCGATAGCGATAACTTAAATGGGGTATTAACACTTTCAACCTGTAGTAATGTCTGTATTTTAACTGATTACTCATTAAATCTGGATTTAAACGAGCCTGCTCCCGCTGACTTTGAATGGCAATATAATCAAGCCATGGCCAAAGTACCTGTGACAAGTGGATTAATTTCTGCTGTTTCATCTGATTATCGAAATAGTCAATTAACCCTCTCATTACAACGAGAACAAGGTGACTGGCATCAACCTAATATTTATCTCGATCCACCACAAGGAATGCTATATGGCATTCCACAGTTAACAGCAAAAGGTGATCATTTATCTGTTACTGTCGATGTAACCGATGATTGGGGAGACGCTGCGGGTGACATTACAGGAAAAGCACTCTCCTTTGTTGTGACTGACGATGGCTATTCACGTCAAGTCAATGACACTATAGGCCAAGGCGATAGCGCATCTCTGCCTACTGCTGACTCGGGGGTAGGATTATGGAGTATTTTAGCCTTTGCGCTGTTAGGGGGCTTAATTCTTAATTTAATGCCTTGTGTGTTGCCTGTTTTGGCAATGAAATTGGGCTCAATTCTTCATATCGAAAAACGTGATACAGGGGCTATTCGTAAACAGTTTTCTGTTTCTGTTGTGGGAATTTTAGTGTCATTTTGGGCCTTAGCGCTGTTTATGACCGTATTACGCTACAGTCAAGAAGCAATAGGTTGGGGCATACAGTTTCAAAGCCCTTGGTTTATCGGCTTTATGGTGCTGATCACGGCTATTTTTACCGCTAATTTATTTGGCCTATTTGAATTACGTTTATCAAGTAATATGAATACCAAAATAGCGACAGCAGGAGGCCAAGGTTATAGTCGACATTTCTGGGAAGGGGCTTTTGCTACATTGCTTGCTACACCGTGTTCAGCCCCTTTCTTGGGGACTGCGGTTGCTTATGCATTGATAGCACCATTAAGTGAGTTATGGTTAATTTTCACCGCATTAGGTCTTGGAATGAGTTTACCATGGATCATGGTTGCTATGTTTCCATCAATTGCCAAAGTGTTGCCAAAACCCGGTAAATGGATGAATCGCCTAAGAGTTGTTTTAGGCTTTATGATGTTGCTATCTTGTATTTGGCTGATCACTTTATTGATCCCCCATTTTGGTATTGGCATTGTTGCGGCTATTTTTGTGGCTATCGCCCTGATCTTGCTTTTTGCTATTGCTAAACATTACGGCAAAAAAACGCTATTTGCTTCAATGGTGATCACCCTTATTTTGGGTGGTACAAGCTATCTATTTATTGCTCAGCCTGATACTCAGACCTTGGCGGGGCAAGATCATGTAAATTGGCAACCACTCTCAGAAGAGGCTATTCATCAAGCGTTAGCTGAAAATAAACGGGTGTTTATTGATGTTACCGCAGATTGGTGTGTTACCTGCAAAGCAAATAAATACAATGTATTATTACGCGATGATGTGCAAAAGGCACTTTCAGAGCCTGATGTTGTCGCATTAAGAGGGGATTGGACGAAACCGTCAGAACAGATCACCCAATTTTTAAAACAGCGCGGTCAAGTCGCCGTGCCGTTTAACCAGATTTATGGACCATGTAACAAGGAGGGGGAGATCCTACCGCCTCTTTTAAATAAAGATCTAATGTTAACTATTCTTTCAGAGGCTAAAGGAGCCCAATAATGAAAAAAACACTTTCTGTACTGGTTATCTCTTCGTTACTTTTTGGTGCA