Homologs in group_1554

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10070 FBDBKF_10070 82.4 Morganella morganii S1 rsfS ribosome silencing factor
EHELCC_04870 EHELCC_04870 82.4 Morganella morganii S2 rsfS ribosome silencing factor
NLDBIP_04870 NLDBIP_04870 82.4 Morganella morganii S4 rsfS ribosome silencing factor
LHKJJB_13760 LHKJJB_13760 82.4 Morganella morganii S3 rsfS ribosome silencing factor
HKOGLL_12775 HKOGLL_12775 82.4 Morganella morganii S5 rsfS ribosome silencing factor
F4V73_RS00265 F4V73_RS00265 84.3 Morganella psychrotolerans rsfS ribosome silencing factor

Distribution of the homologs in the orthogroup group_1554

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1554

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT8 1.12e-50 158 69 0 105 3 rsfS Ribosomal silencing factor RsfS Shigella flexneri
P0AAT6 1.12e-50 158 69 0 105 1 rsfS Ribosomal silencing factor RsfS Escherichia coli (strain K12)
P0AAT7 1.12e-50 158 69 0 105 3 rsfS Ribosomal silencing factor RsfS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44471 6.1e-40 131 56 0 100 3 rsfS Ribosomal silencing factor RsfS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q02SH2 6.44e-33 114 50 0 104 1 rsfS Ribosomal silencing factor RsfS Pseudomonas aeruginosa (strain UCBPP-PA14)
Q97P97 5.23e-22 86 37 0 100 1 rsfS Ribosomal silencing factor RsfS Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q9KD89 8.82e-22 85 34 0 104 1 rsfS Ribosomal silencing factor RsfS Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q5NLX3 3.52e-19 79 34 0 99 1 rsfS Ribosomal silencing factor RsfS Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q7P0P8 3.68e-19 79 39 0 100 1 rsfS Ribosomal silencing factor RsfS Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
P54457 3.2e-16 71 43 0 90 3 rsfS Ribosomal silencing factor RsfS Bacillus subtilis (strain 168)
Q9CWV0 1.07e-15 72 36 2 101 1 Malsu1 Mitochondrial assembly of ribosomal large subunit protein 1 Mus musculus
Q96EH3 5.35e-15 70 36 2 99 1 MALSU1 Mitochondrial assembly of ribosomal large subunit protein 1 Homo sapiens
P73658 3.33e-14 67 34 1 96 1 rsfS Ribosomal silencing factor RsfS Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q9CAF9 1.07e-09 55 33 3 96 2 At1g67620 Protein Iojap-related, mitochondrial Arabidopsis thaliana
O83720 1.85e-07 48 28 4 100 1 rsfS Ribosomal silencing factor RsfS Treponema pallidum (strain Nichols)
P34523 1.81e-05 44 22 3 114 3 K12H4.2 Uncharacterized protein K12H4.2 Caenorhabditis elegans

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02110
Feature type CDS
Gene rsfS
Product ribosome silencing factor
Location 495814 - 496140 (strand: -1)
Length 327 (nucleotides) / 108 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1554
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02410 Ribosomal silencing factor during starvation

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0799 Translation, ribosomal structure and biogenesis (J) J Ribosomal silencing factor RsfS, regulates association of 30S and 50S subunits

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09710 ribosome-associated protein - -

Protein Sequence

MTLLQGSELQQFIIDKLEDSKAQDIIALDVRGKSSVTDYMIICTGTSNRHLMSVADNLVDDCREAGLQPLGIEGQGVSDWIVVDLGEAMVHVMQEDSRRMYELEKLWS

Flanking regions ( +/- flanking 50bp)

TAAAATAGCGCTTTGTTATTTTCTCGATTGAGTTAACTAAATAGAAAAAGGTGACCCTTTTGCAAGGCTCAGAATTACAGCAATTTATTATTGATAAACTTGAGGATTCTAAAGCTCAAGACATTATCGCATTAGATGTTCGTGGAAAATCAAGTGTCACTGATTACATGATCATCTGTACGGGAACTTCAAACAGACACTTAATGTCTGTCGCCGATAATCTGGTTGATGACTGTCGTGAAGCAGGATTACAACCTTTAGGCATCGAAGGACAAGGCGTTTCTGATTGGATTGTTGTTGACCTTGGTGAAGCCATGGTACACGTAATGCAAGAAGACAGTCGCCGTATGTACGAACTCGAAAAACTCTGGAGCTGAGTTTGAAATTACAGCTCATCGCCGTTGGTACAAAAATGCCGGACTGGATC