Homologs in group_759

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03415 FBDBKF_03415 84.3 Morganella morganii S1 dcuA Anaerobic C4-dicarboxylate transporter
EHELCC_07120 EHELCC_07120 84.3 Morganella morganii S2 dcuA Anaerobic C4-dicarboxylate transporter
NLDBIP_07445 NLDBIP_07445 84.3 Morganella morganii S4 dcuA Anaerobic C4-dicarboxylate transporter
LHKJJB_06980 LHKJJB_06980 84.3 Morganella morganii S3 dcuA Anaerobic C4-dicarboxylate transporter
HKOGLL_03950 HKOGLL_03950 84.3 Morganella morganii S5 dcuA Anaerobic C4-dicarboxylate transporter
F4V73_RS11485 F4V73_RS11485 84.8 Morganella psychrotolerans - anaerobic C4-dicarboxylate transporter

Distribution of the homologs in the orthogroup group_759

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_759

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABP2 0.0 719 87 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Shigella flexneri
P0ABN9 0.0 719 87 0 432 1 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli (strain K12)
P0ABP0 0.0 719 87 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABP1 0.0 719 87 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli O157:H7
P44855 9.39e-104 318 43 3 434 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O25425 3.42e-85 271 37 8 459 3 dcuA C4-dicarboxylate transporter DcuA Helicobacter pylori (strain ATCC 700392 / 26695)
O34245 1.75e-84 268 35 3 438 3 dcuA C4-dicarboxylate transporter DcuA Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q9ZLC0 7.14e-83 265 37 7 454 3 dcuA C4-dicarboxylate transporter DcuA Helicobacter pylori (strain J99 / ATCC 700824)
P0ABN8 2.3e-80 258 34 7 443 3 dcuA C4-dicarboxylate transporter DcuA Shigella flexneri
P0ABN5 2.3e-80 258 34 7 443 1 dcuA C4-dicarboxylate transporter DcuA Escherichia coli (strain K12)
P0ABN6 2.3e-80 258 34 7 443 3 dcuA C4-dicarboxylate transporter DcuA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABN7 2.3e-80 258 34 7 443 3 dcuA C4-dicarboxylate transporter DcuA Escherichia coli O157:H7
P40684 7.08e-24 99 45 1 129 3 dcuA C4-dicarboxylate transporter DcuA (Fragment) Serratia marcescens

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01890
Feature type CDS
Gene -
Product anaerobic C4-dicarboxylate transporter
Location 443584 - 444924 (strand: 1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_759
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03605 Anaerobic c4-dicarboxylate membrane transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2704 Carbohydrate transport and metabolism (G) G Anaerobic C4-dicarboxylate transporter

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07792 anaerobic C4-dicarboxylate transporter DcuB Two-component system -

Protein Sequence

MDFIIQLAIILVCLFYGARKGGIALGLLGGVGLVILVFIFNLPPGKPPVDVMLVIIAVVSASATLQASGGLDVMLQIAEKLLRKNPKYISIVAPLVTCTLTILCGTGHVVYTILPIIYDVSIKNNIRPERPMAASTIGSQMGIIASPVSVAVVTLVAMLGNVTFNGKHLEFLDLLAITIPSTFIGILAIGIFSWFRGKELDKDQRFQDFISIPENHDYVYGDTATLLDKKLPMKNWVAMWIFLGAIAVVAVLGAFSELRPVFNNKPLSMVLVIQMFMLLAGASIIIICKTNPSLISKNEVFRSGMIAIVAVYGIAWMAETMFSAHMKEIEAALGQLVREYPWAYAVVLLLVSKFVNSQAAALAAIVPLALGIGIDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTRIGRFVINHSFILPGLIGVTVSCIFGWVFAAMYGFL

Flanking regions ( +/- flanking 50bp)

ATTGTATTATTTTTTATTTCTATTCCGATGCGTTTTTTAAGGGGTTAATGATGGATTTTATAATACAACTCGCCATTATATTAGTTTGTTTATTTTATGGAGCAAGGAAAGGGGGAATTGCATTAGGTCTATTAGGCGGAGTGGGGCTGGTTATTTTAGTCTTTATTTTTAATTTACCTCCGGGTAAACCGCCTGTCGATGTGATGTTAGTGATTATTGCTGTCGTCTCTGCATCTGCAACGTTACAAGCATCGGGTGGTTTAGATGTTATGTTGCAAATAGCTGAAAAATTATTAAGAAAAAATCCGAAGTATATTTCTATTGTTGCACCTCTCGTTACCTGTACCCTGACTATATTATGTGGTACTGGACATGTGGTTTATACCATTTTGCCTATTATCTATGATGTATCGATTAAAAATAATATTCGTCCAGAAAGACCGATGGCAGCCAGTACCATTGGTTCACAAATGGGAATTATCGCAAGTCCCGTATCTGTTGCGGTCGTCACCTTAGTGGCAATGTTAGGTAATGTCACTTTTAATGGTAAGCATCTTGAATTTTTAGATTTATTAGCGATTACCATTCCATCAACCTTTATTGGTATTTTAGCCATTGGGATTTTTAGCTGGTTTAGAGGTAAAGAGTTAGATAAAGATCAGCGCTTCCAAGATTTTATTTCCATACCAGAGAATCATGATTACGTTTATGGTGATACTGCAACATTGTTAGATAAAAAATTACCAATGAAAAATTGGGTAGCAATGTGGATATTCTTAGGTGCGATTGCGGTTGTTGCTGTATTAGGTGCATTTTCTGAATTACGTCCCGTATTTAATAATAAACCATTATCTATGGTATTAGTTATTCAAATGTTTATGTTATTAGCGGGCGCTTCTATTATTATTATTTGTAAAACTAATCCCTCACTTATTTCTAAAAATGAAGTTTTTCGCTCCGGTATGATAGCCATTGTGGCGGTCTATGGTATTGCTTGGATGGCAGAAACCATGTTCTCTGCACATATGAAAGAAATAGAAGCTGCATTAGGACAATTAGTTCGTGAGTATCCTTGGGCTTATGCCGTTGTCTTATTACTTGTTTCTAAGTTTGTTAATTCACAAGCCGCCGCATTAGCCGCAATAGTCCCCTTGGCTTTAGGTATTGGTATTGATCCTGCCTATATTGTTGCTTCAGCACCGGCGTGTTATGGCTATTATATTCTTCCTACTTACCCCAGTGATTTAGCCGCTATCCAATTTGACCGTTCAGGAACAACACGTATAGGTCGTTTTGTTATTAATCATAGCTTTATTTTACCGGGATTAATTGGTGTTACTGTTTCTTGTATTTTTGGCTGGGTATTTGCTGCTATGTATGGTTTTTTATAATTAGCTAAATTATCCTGGGAATAGAGTCATAAAAGTAGAAAAGCCAGATA