COG2704


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2704, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Anaerobic C4-dicarboxylate transporter
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2704 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_759 FBDBKF_03415 86931 88271 -1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S1
1 group_809 FBDBKF_03820 168649 169950 1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S1
2 group_809 EHELCC_06715 77153 78454 -1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S2
3 group_759 EHELCC_07120 158832 160172 1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S2
4 group_809 NLDBIP_07040 77026 78327 -1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S4
5 group_759 NLDBIP_07445 158705 160045 1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S4
6 group_809 LHKJJB_06575 40772 42073 -1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S3
7 group_759 LHKJJB_06980 122451 123791 1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S3
8 group_759 HKOGLL_03950 109596 110936 -1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S5
9 group_809 HKOGLL_04355 191314 192615 1 dcuA Anaerobic C4-dicarboxylate transporter Morganella morganii S5
10 group_809 F4V73_RS11050 346404 347705 -1 anaerobic C4-dicarboxylate transporter Morganella psychrotolerans
11 group_759 F4V73_RS11485 441918 443258 1 anaerobic C4-dicarboxylate transporter Morganella psychrotolerans
12 group_759 PMI_RS01890 443584 444924 1 anaerobic C4-dicarboxylate transporter Proteus mirabilis HI4320
13 group_809 PMI_RS12595 2791305 2792630 1 anaerobic C4-dicarboxylate transporter Proteus mirabilis HI4320