Homologs in group_759

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03415 FBDBKF_03415 93.0 Morganella morganii S1 dcuA Anaerobic C4-dicarboxylate transporter
EHELCC_07120 EHELCC_07120 93.0 Morganella morganii S2 dcuA Anaerobic C4-dicarboxylate transporter
NLDBIP_07445 NLDBIP_07445 93.0 Morganella morganii S4 dcuA Anaerobic C4-dicarboxylate transporter
LHKJJB_06980 LHKJJB_06980 93.0 Morganella morganii S3 dcuA Anaerobic C4-dicarboxylate transporter
HKOGLL_03950 HKOGLL_03950 93.0 Morganella morganii S5 dcuA Anaerobic C4-dicarboxylate transporter
PMI_RS01890 PMI_RS01890 84.8 Proteus mirabilis HI4320 - anaerobic C4-dicarboxylate transporter

Distribution of the homologs in the orthogroup group_759

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_759

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABP2 0.0 718 89 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Shigella flexneri
P0ABN9 0.0 718 89 0 432 1 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli (strain K12)
P0ABP0 0.0 718 89 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABP1 0.0 718 89 0 432 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Escherichia coli O157:H7
P44855 7.17e-111 337 44 4 440 3 dcuB Anaerobic C4-dicarboxylate transporter DcuB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O34245 6.26e-89 280 37 5 439 3 dcuA C4-dicarboxylate transporter DcuA Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
O25425 7.36e-86 272 36 7 459 3 dcuA C4-dicarboxylate transporter DcuA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZLC0 7.77e-86 272 37 7 457 3 dcuA C4-dicarboxylate transporter DcuA Helicobacter pylori (strain J99 / ATCC 700824)
P0ABN8 6.25e-83 265 35 6 441 3 dcuA C4-dicarboxylate transporter DcuA Shigella flexneri
P0ABN5 6.25e-83 265 35 6 441 1 dcuA C4-dicarboxylate transporter DcuA Escherichia coli (strain K12)
P0ABN6 6.25e-83 265 35 6 441 3 dcuA C4-dicarboxylate transporter DcuA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABN7 6.25e-83 265 35 6 441 3 dcuA C4-dicarboxylate transporter DcuA Escherichia coli O157:H7
P40684 5.91e-25 102 44 1 129 3 dcuA C4-dicarboxylate transporter DcuA (Fragment) Serratia marcescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS11485
Feature type CDS
Gene -
Product anaerobic C4-dicarboxylate transporter
Location 441918 - 443258 (strand: 1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_759
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03605 Anaerobic c4-dicarboxylate membrane transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2704 Carbohydrate transport and metabolism (G) G Anaerobic C4-dicarboxylate transporter

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07792 anaerobic C4-dicarboxylate transporter DcuB Two-component system -

Protein Sequence

MDFVIQLIVVLICLFYGARKGGIALGLLGGIGLVILVFVFHLKPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAERLLRRNPKYVSIVAPFVTCLLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASTIGSQMGIIASPVSVAVVSLVAMLGDVTLNGKHLGFVDLLAITIPSTLIGILCIGIFSWYRGKDLDKDPEFQEFISKPENKEYVYGDTVTLLDKKLPRSNWLAMWIFLSSIAAVALMGAFPELRPVFDGKPLSMVLVIQIFMLFAGALIIIFTKTKPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHLDQIKTVLGSLVTEYPWAYAVVLLLVSKFVNSQAAALAAIVPVALAIGVNPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTKIGRFVINHSFIFPGLIGVGVSCVFGWVFAAMYGFL

Flanking regions ( +/- flanking 50bp)

AGCCGACGAACCTGCGGTTTGAATGAATAAGGGTCTAAAAGGAGTTAGTTATGGATTTTGTTATCCAGCTTATTGTGGTGTTGATCTGTCTGTTTTACGGTGCACGAAAGGGGGGTATCGCGCTTGGGTTATTAGGCGGGATTGGTTTGGTTATACTGGTCTTTGTGTTTCATCTCAAACCGGGAAAACCCCCGGTGGATGTCATGCTGGTGATTATTGCGGTTGTTGCAGCTTCCGCGACATTACAGGCGTCCGGCGGGCTGGATGTGATGCTCCAGATTGCTGAACGGCTGCTCAGACGTAACCCTAAGTATGTCTCAATTGTGGCACCATTTGTTACCTGTCTGCTGACCATTTTGTGCGGTACCGGGCATGTTGTGTATACCATTTTACCGATCATTTATGATGTGGCGATTAAAAATAATATCCGTCCGGAAAGACCAATGGCGGCCAGTACGATAGGTTCCCAGATGGGCATAATCGCAAGCCCGGTGTCTGTCGCGGTGGTGTCATTAGTGGCGATGCTGGGGGATGTGACATTAAACGGAAAACATCTCGGGTTTGTTGATTTACTGGCGATTACTATTCCGTCAACACTTATCGGAATATTATGTATCGGGATATTCAGCTGGTATCGCGGCAAAGATTTGGATAAAGACCCGGAGTTTCAGGAATTTATTTCCAAGCCTGAAAATAAAGAATATGTGTATGGCGATACCGTCACACTGCTGGATAAAAAATTACCCCGCAGCAACTGGTTAGCGATGTGGATCTTTTTATCTTCTATTGCTGCTGTGGCGCTGATGGGCGCATTTCCTGAGCTACGGCCTGTGTTTGACGGAAAACCCCTCTCGATGGTACTGGTTATTCAAATCTTTATGCTGTTTGCCGGTGCGCTGATTATTATTTTCACCAAAACCAAACCTGCGTCTATTTCAAAAAATGAAGTATTTCGTTCAGGGATGATTGCGATTGTGGCGGTCTACGGTATTGCGTGGATGGCGGAAACCATGTTCGGCGCGCATTTGGATCAGATAAAAACCGTATTAGGTTCTCTGGTCACCGAATACCCGTGGGCATACGCGGTGGTATTATTGCTGGTATCAAAATTTGTAAACTCCCAGGCTGCGGCACTGGCGGCAATTGTCCCTGTTGCGCTGGCGATTGGTGTGAATCCGGCGTATATCGTGGCATCCGCACCGGCCTGTTATGGTTATTATATTCTGCCGACTTACCCGAGTGATCTCGCGGCTATCCAGTTTGACCGTTCCGGCACCACAAAAATAGGGCGGTTTGTGATTAACCACAGCTTTATTTTTCCGGGGTTGATTGGCGTGGGTGTTTCCTGTGTATTTGGCTGGGTTTTCGCTGCAATGTACGGATTCTTATAATCCTGCACTGTAACTTACTGATAACGGACATTTTGTCCGTTATCAGTAGC