Homologs in group_2013

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15125 FBDBKF_15125 50.6 Morganella morganii S1 yafK Murein L,D-transpeptidase YafK
EHELCC_11120 EHELCC_11120 50.6 Morganella morganii S2 yafK Murein L,D-transpeptidase YafK
NLDBIP_11465 NLDBIP_11465 50.6 Morganella morganii S4 yafK Murein L,D-transpeptidase YafK
LHKJJB_11325 LHKJJB_11325 50.6 Morganella morganii S3 yafK Murein L,D-transpeptidase YafK
HKOGLL_09935 HKOGLL_09935 50.6 Morganella morganii S5 yafK Murein L,D-transpeptidase YafK
F4V73_RS12320 F4V73_RS12320 54.3 Morganella psychrotolerans - murein L,D-transpeptidase family protein

Distribution of the homologs in the orthogroup group_2013

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2013

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AA99 4.65e-76 233 51 3 221 1 yafK Putative L,D-transpeptidase YafK Escherichia coli (strain K12)
P0AAA0 4.65e-76 233 51 3 221 3 yafK Putative L,D-transpeptidase YafK Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01680
Feature type CDS
Gene -
Product murein L,D-transpeptidase family protein
Location 400656 - 401408 (strand: -1)
Length 753 (nucleotides) / 250 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2013
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03734 L,D-transpeptidase catalytic domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3034 Cell wall/membrane/envelope biogenesis (M) M Murein L,D-transpeptidase YafK

Protein Sequence

MTSHAKQLIIFLTIILTSLFVNAENSSKFLIKPVKKSTGEPIYIQIFKEENLLELYIEKQDGQLEKIRTYPICSYSGGLGPKKYQGDLKSPEGFYQVNQTQLNPNSRFYRAINLGFPNQYDQEQGYTGDFLMIHGACKSVGCYAMTDTVMDEIYQYAELALKNGQQSINIHIFPFKMTAENMKKFQYSANMDFWQQLAPAYQYVEEYKKIPSISVKNGRYLVNNREAISTLNLAKSIDSKWLQNSQPTIK

Flanking regions ( +/- flanking 50bp)

TCTACAATCTAGTTTATCAACAAATTTTAAGCCTTTTTTTTGATAAAACCATGACCAGTCACGCAAAACAATTAATCATATTTTTAACAATAATATTAACCTCATTATTTGTTAACGCTGAAAATAGTTCAAAATTTCTTATCAAACCTGTTAAAAAAAGTACAGGAGAGCCCATCTATATTCAAATATTTAAAGAAGAAAACTTACTAGAACTGTATATAGAAAAACAGGATGGACAATTAGAGAAAATACGTACTTATCCCATTTGTAGCTATTCGGGAGGATTAGGTCCGAAGAAATATCAAGGTGATTTAAAAAGTCCCGAAGGCTTTTATCAAGTTAATCAAACTCAGCTTAACCCAAATAGTCGGTTTTATCGAGCAATTAACCTAGGATTTCCTAATCAATACGATCAAGAGCAAGGTTATACCGGTGATTTCTTGATGATCCACGGTGCTTGTAAATCAGTGGGTTGCTACGCAATGACCGATACTGTGATGGATGAAATCTACCAATATGCCGAACTTGCGCTGAAAAATGGCCAACAGAGCATTAATATTCATATTTTCCCTTTTAAAATGACAGCCGAAAATATGAAAAAATTCCAATACTCTGCCAATATGGATTTTTGGCAACAGTTAGCACCTGCTTACCAATATGTGGAAGAATACAAAAAGATCCCATCGATTAGTGTAAAAAACGGTCGCTATTTGGTGAATAATCGTGAGGCTATTTCCACATTAAATTTAGCTAAAAGTATCGATAGTAAATGGTTACAAAATTCGCAACCCACGATCAAATAAAACAAACTCACCAACAGGAATTTTTTGCCAAGATTCATTACCTGTTAAGG