Homologs in group_2042

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15065 FBDBKF_15065 74.5 Morganella morganii S1 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
EHELCC_11180 EHELCC_11180 74.5 Morganella morganii S2 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
NLDBIP_11525 NLDBIP_11525 74.5 Morganella morganii S4 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
LHKJJB_11385 LHKJJB_11385 74.5 Morganella morganii S3 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
HKOGLL_09995 HKOGLL_09995 74.5 Morganella morganii S5 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
F4V73_RS12385 F4V73_RS12385 74.5 Morganella psychrotolerans rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase

Distribution of the homologs in the orthogroup group_2042

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2042

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGL9 6.47e-143 402 77 0 243 3 rsmE Ribosomal RNA small subunit methyltransferase E Shigella flexneri
P0AGL7 6.47e-143 402 77 0 243 1 rsmE Ribosomal RNA small subunit methyltransferase E Escherichia coli (strain K12)
P0AGL8 6.47e-143 402 77 0 243 3 rsmE Ribosomal RNA small subunit methyltransferase E Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P37995 7.27e-136 384 75 1 244 3 rsmE Ribosomal RNA small subunit methyltransferase E Dickeya dadantii (strain 3937)
P44627 8.2e-116 334 66 1 244 1 rsmE Ribosomal RNA small subunit methyltransferase E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9E4 4.07e-73 226 46 1 243 3 rsmE Ribosomal RNA small subunit methyltransferase E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57488 2.01e-59 191 41 1 242 3 rsmE Ribosomal RNA small subunit methyltransferase E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P54461 6.99e-23 96 31 3 229 1 rsmE Ribosomal RNA small subunit methyltransferase E Bacillus subtilis (strain 168)
O50188 2.57e-21 92 30 6 209 3 rsmE Ribosomal RNA small subunit methyltransferase E Mesomycoplasma hyopneumoniae (strain 232)
P72667 4.57e-17 81 28 6 240 3 rsmE Ribosomal RNA small subunit methyltransferase E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P9WGX1 2.7e-15 76 25 4 214 1 rsmE Ribosomal RNA small subunit methyltransferase E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGX0 2.7e-15 76 25 4 214 3 rsmE Ribosomal RNA small subunit methyltransferase E Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P67203 2.7e-15 76 25 4 214 3 rsmE Ribosomal RNA small subunit methyltransferase E Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9ZDZ5 7.65e-15 73 28 5 202 3 rsmE Ribosomal RNA small subunit methyltransferase E Rickettsia prowazekii (strain Madrid E)
O66552 2.31e-13 70 26 8 223 1 rsmE Ribosomal RNA small subunit methyltransferase E Aquifex aeolicus (strain VF5)
Q92J59 2.54e-13 70 26 7 229 3 rsmE Ribosomal RNA small subunit methyltransferase E Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O51333 6.35e-08 55 21 5 217 3 rsmE2 Ribosomal RNA small subunit methyltransferase E 2 Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q9ZKD2 1.82e-07 53 25 12 243 3 rsmE Ribosomal RNA small subunit methyltransferase E Helicobacter pylori (strain J99 / ATCC 700824)
O25138 1.74e-06 50 25 10 239 3 rsmE Ribosomal RNA small subunit methyltransferase E Helicobacter pylori (strain ATCC 700392 / 26695)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01630
Feature type CDS
Gene rsmE
Product 16S rRNA (uracil(1498)-N(3))-methyltransferase
Location 389941 - 390672 (strand: -1)
Length 732 (nucleotides) / 243 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2042
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04452 RNA methyltransferase domain
PF20260 RNA methyltransferase PUA domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1385 Translation, ribosomal structure and biogenesis (J) J 16S rRNA U1498 N3-methylase RsmE

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] - -

Protein Sequence

MRIPRIYHPEPLSAGTQTSLAEEAANHVGRVLRMSKGQKLALFDGSNQVFDADIIESSKKSVIVQINEGQMDDRESPLDLHLGQVLSRGEKMEFTIQKSVELGVNTITPLISERCGVKLDPSRLEKKHQQWQKIIISACEQCGRNKIPQLMPVMSLEAWCAQTDDSLKLNLHPRASQSINTLPLPVKKVRLLIGPEGGLSPEEIAMTAKYHFTDILLGPRVLRTETTALTAITALQVRFGDLG

Flanking regions ( +/- flanking 50bp)

CACAATATCTTGTTTATCATGGTTAACATTTTACGTAAGGGTTTCACGTTATGCGTATTCCTCGCATTTATCATCCAGAGCCACTCAGTGCAGGTACACAAACTTCATTAGCAGAAGAAGCTGCAAATCACGTTGGACGAGTATTAAGAATGTCAAAAGGCCAAAAACTGGCACTTTTTGATGGCTCCAATCAAGTATTTGATGCTGATATTATCGAAAGTAGCAAAAAATCAGTGATTGTGCAGATTAATGAAGGACAAATGGATGATAGAGAATCCCCACTTGATCTCCATTTAGGCCAAGTACTTTCACGTGGTGAAAAAATGGAGTTTACTATCCAAAAGTCCGTTGAATTAGGTGTTAACACTATTACTCCGCTGATCTCTGAACGTTGTGGTGTTAAACTAGATCCTAGTCGTTTAGAAAAAAAGCATCAGCAATGGCAAAAAATTATTATCTCAGCCTGTGAACAATGTGGCAGAAATAAAATTCCACAGCTTATGCCGGTGATGTCATTAGAGGCGTGGTGTGCCCAAACGGATGATAGCTTAAAACTTAATTTACACCCTAGAGCAAGCCAAAGTATTAATACCTTGCCACTTCCAGTTAAAAAAGTACGACTATTAATTGGCCCTGAGGGGGGATTATCCCCTGAAGAAATTGCCATGACAGCAAAATACCATTTTACTGATATTTTATTAGGTCCTCGTGTATTAAGAACTGAAACAACAGCACTCACCGCAATCACCGCTTTGCAGGTTCGGTTCGGCGATCTGGGATAAAGGAGAAATAATGATTAAATTAGGTATTGTGATGGATCCTATTTCATCCA