Orthogroup:group_2042


Homologs in group_2042

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_15310 FBDBKF_15310 Morganella morganii S1 rimM ribosome maturation factor RimM
EHELCC_10935 EHELCC_10935 Morganella morganii S2 rimM ribosome maturation factor RimM
NLDBIP_11280 NLDBIP_11280 Morganella morganii S4 rimM ribosome maturation factor RimM
LHKJJB_11140 LHKJJB_11140 Morganella morganii S3 rimM ribosome maturation factor RimM
HKOGLL_09750 HKOGLL_09750 Morganella morganii S5 rimM ribosome maturation factor RimM
F4V73_RS12140 F4V73_RS12140 Morganella psychrotolerans rimM ribosome maturation factor RimM
PMI_RS01865 PMI_RS01865 Proteus mirabilis HI4320 rimM ribosome maturation factor RimM

Distribution of group_2042 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2042 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2042

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2042.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rimM 7

Product

# Product Occurence
1 ribosome maturation factor RimM 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0806 7 J Translation, ribosomal structure and biogenesis (J) Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K02860 7 16S rRNA processing protein RimM - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01782 7 RimM N-terminal domain
PF05239 7 PRC-barrel domain

Annotations of the 543 SwissProt hits

Annotation Number of occurrences
Ribosome maturation factor RimM 543

Protein length

Min length 181
Max length 182
Mean length (sd) 181.9 (0.4)
Median length 182.0

Protein length distribution