Homologs in group_1999

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15040 FBDBKF_15040 71.1 Morganella morganii S1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
EHELCC_11205 EHELCC_11205 71.1 Morganella morganii S2 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
NLDBIP_11550 NLDBIP_11550 71.1 Morganella morganii S4 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
LHKJJB_11410 LHKJJB_11410 71.1 Morganella morganii S3 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
HKOGLL_10020 HKOGLL_10020 71.1 Morganella morganii S5 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
F4V73_RS12410 F4V73_RS12410 71.6 Morganella psychrotolerans - YggS family pyridoxal phosphate-dependent enzyme

Distribution of the homologs in the orthogroup group_1999

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1999

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67080 4.09e-119 341 70 1 234 1 yggS Pyridoxal phosphate homeostasis protein Escherichia coli (strain K12)
P67081 4.09e-119 341 70 1 234 3 yggS Pyridoxal phosphate homeostasis protein Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67082 4.09e-119 341 70 1 234 3 yggS Pyridoxal phosphate homeostasis protein Escherichia coli O157:H7
P52055 3.88e-99 291 60 1 233 3 None Pyridoxal phosphate homeostasis protein Vibrio alginolyticus
Q9CPD5 4.6e-98 288 63 2 231 3 PM0112 Pyridoxal phosphate homeostasis protein Pasteurella multocida (strain Pm70)
Q9KUQ4 1.21e-97 287 60 1 234 3 VC_0461 Pyridoxal phosphate homeostasis protein Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P44506 5.01e-92 273 60 2 230 1 HI_0090 Pyridoxal phosphate homeostasis protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P24562 1.02e-73 226 53 3 233 3 PA0394 Pyridoxal phosphate homeostasis protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q89A48 6.28e-62 196 43 1 224 3 bbp_497 Pyridoxal phosphate homeostasis protein Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K929 2.46e-58 187 45 0 197 3 BUsg_531 Pyridoxal phosphate homeostasis protein Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57614 4.31e-53 172 42 1 198 3 BU549 Pyridoxal phosphate homeostasis protein Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9P6Q1 9.85e-37 132 37 6 233 3 SPAC644.09 Pyridoxal phosphate homeostasis protein Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P52056 3.18e-36 130 38 3 205 3 slr0556 Pyridoxal phosphate homeostasis protein Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O66631 1.43e-34 126 34 2 225 3 aq_274 Pyridoxal phosphate homeostasis protein Aquifex aeolicus (strain VF5)
P52057 2.08e-32 120 35 6 237 3 F09E5.8 Pyridoxal phosphate homeostasis protein Caenorhabditis elegans
Q3T0G5 5.74e-32 120 35 7 239 2 PLPBP Pyridoxal phosphate homeostasis protein Bos taurus
Q9Z2Y8 2.05e-31 119 34 9 247 1 Plpbp Pyridoxal phosphate homeostasis protein Mus musculus
O94903 1.36e-30 117 35 7 239 1 PLPBP Pyridoxal phosphate homeostasis protein Homo sapiens
Q5R4Z1 1.53e-29 114 38 6 215 2 PLPBP Pyridoxal phosphate homeostasis protein Pongo abelii
Q9ZKF2 1.58e-29 112 36 5 225 3 jhp_0986 Pyridoxal phosphate homeostasis protein Helicobacter pylori (strain J99 / ATCC 700824)
O25156 3.4e-29 112 37 4 198 3 HP_0395 Pyridoxal phosphate homeostasis protein Helicobacter pylori (strain ATCC 700392 / 26695)
Q9CCE2 3.54e-29 112 32 4 235 3 ML0919 Pyridoxal phosphate homeostasis protein Mycobacterium leprae (strain TN)
Q1ZXI6 1.31e-28 111 34 7 245 3 prosc Pyridoxal phosphate homeostasis protein Dictyostelium discoideum
P38197 2.3e-28 110 37 6 212 1 YBL036C Pyridoxal phosphate homeostasis protein Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O31727 3.45e-28 109 31 5 226 3 ylmE Pyridoxal phosphate homeostasis protein Bacillus subtilis (strain 168)
O24748 6.36e-25 100 32 4 231 3 Cgl2153 Pyridoxal phosphate homeostasis protein Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P9WFQ7 1.72e-23 98 28 6 250 1 Rv2148c Pyridoxal phosphate homeostasis protein Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WFQ6 1.72e-23 98 28 6 250 3 MT2207 Pyridoxal phosphate homeostasis protein Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P67084 1.72e-23 98 28 6 250 3 BQ2027_MB2172C Pyridoxal phosphate homeostasis protein Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9RUL6 1.25e-17 81 31 8 217 3 DR_1368 Pyridoxal phosphate homeostasis protein Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01605
Feature type CDS
Gene -
Product YggS family pyridoxal phosphate-dependent enzyme
Location 386143 - 386841 (strand: -1)
Length 699 (nucleotides) / 232 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1999
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01168 Alanine racemase, N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0325 Coenzyme transport and metabolism (H) H Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06997 PLP dependent protein - -

Protein Sequence

MNTIKQNLVNVRSHIDTAAQKCGRSPDEITLLAVSKTKPVSDIEKAIACGQTEFGENYVQEGVDKISYFAENKNLVWHFIGPLQSNKTRLVAEHFAWCHTIDRLKIAQRLSDQRPTTLPPLNVLIQINISDENSKSGISLTELDGLAAQISILPGIKLRGLMAIPAPENDYNKQVEVLEKMHQAFKQLQNQYPDIDTLSMGMTGDMEAAIACGSTLVRIGTAIFGARDYANK

Flanking regions ( +/- flanking 50bp)

CTATATATAATTAATTTTTCCATATTCATCTTATTATCTCCTGAGTTGCCATGAATACTATTAAACAGAATCTCGTCAATGTCAGGTCTCACATTGACACCGCAGCGCAAAAATGCGGACGTTCTCCAGACGAAATAACTCTACTTGCAGTTAGTAAAACTAAGCCTGTGAGCGATATCGAAAAAGCAATTGCATGTGGACAAACTGAATTTGGTGAAAACTATGTGCAGGAAGGTGTAGATAAAATCAGCTATTTTGCTGAAAACAAAAATTTAGTTTGGCACTTTATTGGCCCATTGCAGTCCAATAAAACACGTCTTGTTGCTGAACATTTTGCCTGGTGCCATACCATAGATAGATTAAAAATAGCGCAAAGATTAAGTGATCAACGTCCAACTACGTTACCGCCACTCAATGTTTTGATCCAAATAAATATTAGTGATGAAAACAGTAAATCAGGGATCTCTCTTACCGAGCTTGATGGCCTTGCTGCACAAATATCCATTCTGCCAGGGATCAAACTGCGCGGACTAATGGCTATTCCTGCCCCAGAAAATGACTATAACAAGCAAGTCGAGGTACTAGAAAAAATGCATCAGGCATTTAAACAGTTACAAAACCAGTACCCCGATATTGATACATTGTCGATGGGAATGACTGGTGATATGGAAGCAGCAATTGCCTGTGGCTCAACACTGGTACGCATTGGAACGGCCATTTTTGGCGCTCGTGATTACGCCAATAAATAAAAAAGAGGTTAAATTAGTATGGAACATCGCAATATCGCTTTTATTGGTGC