COG0325


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0325, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family
Function(s) descr. Coenzyme transport and metabolism (H)

Occurence in the database

COG0325 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1999 FBDBKF_15040 18541 19239 -1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S1
1 group_1999 EHELCC_11205 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S2
2 group_1999 NLDBIP_11550 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S4
3 group_1999 LHKJJB_11410 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S3
4 group_1999 HKOGLL_10020 65667 66365 1 yggS Pyridoxal 5'-phosphate homeostasis protein YggS, UPF0001 family Morganella morganii S5
5 group_1999 F4V73_RS12410 66358 67056 1 YggS family pyridoxal phosphate-dependent enzyme Morganella psychrotolerans
6 group_1999 PMI_RS01605 386143 386841 -1 YggS family pyridoxal phosphate-dependent enzyme Proteus mirabilis HI4320