Homologs in group_303

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07995 FBDBKF_07995 35.9 Morganella morganii S1 tolC Outer membrane protein TolC
EHELCC_13825 EHELCC_13825 35.9 Morganella morganii S2 tolC Outer membrane protein TolC
NLDBIP_14270 NLDBIP_14270 35.9 Morganella morganii S4 tolC Outer membrane protein TolC
LHKJJB_08580 LHKJJB_08580 35.9 Morganella morganii S3 tolC Outer membrane protein TolC
HKOGLL_08130 HKOGLL_08130 35.9 Morganella morganii S5 tolC Outer membrane protein TolC
F4V73_RS03920 F4V73_RS03920 18.7 Morganella psychrotolerans - Cu(I)/Ag(I) efflux RND transporter outer membrane protein
F4V73_RS12990 F4V73_RS12990 43.3 Morganella psychrotolerans - TolC family outer membrane protein

Distribution of the homologs in the orthogroup group_303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q03027 1.5e-93 293 35 6 451 3 aprF Alkaline protease secretion protein AprF Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23598 1.5e-74 244 32 5 455 3 prtF Proteases secretion protein PrtF Dickeya chrysanthemi
Q9K2Y1 5.69e-31 127 27 8 450 1 tolC Outer membrane protein TolC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q54001 6.13e-20 95 24 7 434 1 tolC Outer membrane protein TolC Salmonella enteritidis
P02930 8.15e-20 95 24 8 416 1 tolC Outer membrane protein TolC Escherichia coli (strain K12)
Q8G0Y6 1.14e-16 85 21 7 351 1 bepC Outer membrane efflux protein BepC Brucella suis biovar 1 (strain 1330)
Q93PU3 5.36e-10 65 23 2 243 2 ttgI Toluene efflux pump outer membrane protein TtgI Pseudomonas putida (strain DOT-T1E)
O31101 5.36e-10 65 23 2 243 2 srpC Solvent efflux pump outer membrane protein SrpC Pseudomonas putida
P24145 8.77e-09 61 19 3 293 3 nodT Nodulation protein T Rhizobium leguminosarum bv. trifolii
P77211 2.42e-08 59 24 5 226 1 cusC Cation efflux system protein CusC Escherichia coli (strain K12)
Q8CWA4 2.65e-08 59 23 2 225 3 cusC Cation efflux system protein CusC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XBY3 5.28e-08 58 24 5 226 3 cusC Cation efflux system protein CusC Escherichia coli O157:H7
Q51487 5.66e-07 55 22 3 283 1 oprM Outer membrane protein OprM Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q88N32 1.93e-05 50 21 2 243 1 ttgC Probable efflux pump outer membrane protein TtgC Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P0C071 1.93e-05 50 21 2 243 1 mepC Multidrug/solvent efflux pump outer membrane protein MepC Pseudomonas putida
Q9KJC1 2.07e-05 50 21 2 243 2 arpC Antibiotic efflux pump outer membrane protein ArpC Pseudomonas putida
Q9WWZ8 3.47e-05 49 21 2 243 2 ttgC Toluene efflux pump outer membrane protein TtgC Pseudomonas putida (strain DOT-T1E)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01340
Feature type CDS
Gene -
Product TolC family outer membrane protein
Location 324361 - 325713 (strand: -1)
Length 1353 (nucleotides) / 450 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_303
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02321 Outer membrane efflux protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1538 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein TolC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12538 outer membrane protein, type I secretion system - -

Protein Sequence

MMLIKKLFTLFSVGLLSLPASAVTLSDLYFLAIKHDPTFNAAVKEQVAGKEYENIGLSQLLPNISVNYKNNPRNWQRKAYPINIFQDKITTVEYQNYQSYSVNAIISQPLFDYTAFSEYKASIIKTLLADSHYQNKFSELIIRLIDNYIQVAYTQDKLLLNQAQQEIYQKQLASSQRLFELGEGTKTDIAEIETRLYLTQSQYTDLQLEIEKAKNKLSAMIGSQLPTHEHIAKLTDTKFVLQSLAPDDYSTWEKNAIQNNLKIQSARHEMAIAKQEIEKNRGEFFPTVQFYAAYSSSNSDSNNTINQKYQSANVGFYVSMPLFNGGKTTASMRQSTAKYQMSAFERDAIIQNIMQELRYQYQICSTSHIKLMAFEQAVSSAKLQLNATRKSYIGGQRTMVDVLNAEELLYRAQQDLIKAKYDYIQAWALLHQYTNTLDIEKIKIIENYFQ

Flanking regions ( +/- flanking 50bp)

CTTTTCAAACCAGTATTGGATAGGCTCCATACTTCATTAACGGAAGAATAATGATGCTAATAAAAAAACTTTTTACACTTTTTTCCGTAGGACTCCTAAGCTTGCCAGCTTCAGCGGTTACACTGTCTGATCTCTATTTTTTAGCGATTAAACATGATCCCACATTTAATGCTGCGGTAAAAGAGCAAGTAGCAGGTAAAGAGTATGAAAATATCGGGTTATCACAATTGCTACCCAATATTTCTGTCAATTACAAAAATAATCCTCGCAACTGGCAACGTAAGGCTTATCCAATAAATATATTTCAGGATAAAATAACAACAGTTGAGTATCAAAACTATCAAAGCTATTCTGTCAACGCGATTATTAGTCAACCACTATTTGACTACACCGCATTTAGTGAATACAAAGCTTCTATCATTAAAACATTATTAGCAGACAGTCATTATCAAAATAAATTTTCAGAATTAATTATTCGACTTATTGATAATTATATTCAAGTTGCTTATACACAAGATAAATTATTGCTAAATCAAGCACAGCAAGAAATCTATCAAAAACAACTAGCTTCAAGTCAACGCCTATTTGAGTTAGGAGAAGGAACCAAAACAGATATTGCTGAAATAGAGACTCGTTTATATTTAACCCAGTCACAATATACCGATCTTCAATTAGAAATTGAAAAGGCTAAAAACAAACTCAGTGCTATGATCGGTTCACAATTGCCTACTCATGAGCACATCGCAAAGCTAACTGATACAAAGTTTGTTCTTCAATCACTGGCTCCCGATGACTATTCCACATGGGAAAAAAATGCCATACAAAATAACTTAAAGATACAATCTGCTCGTCATGAAATGGCGATAGCTAAACAAGAGATTGAGAAAAATAGAGGAGAATTTTTCCCAACAGTACAATTTTATGCGGCTTACTCTAGTAGTAATTCTGATAGTAATAATACCATTAACCAGAAATACCAATCTGCTAACGTGGGTTTTTATGTCAGTATGCCTTTATTTAATGGGGGTAAAACAACGGCATCAATGCGTCAGTCGACAGCAAAATATCAGATGAGTGCATTTGAAAGGGATGCTATTATTCAAAATATTATGCAGGAATTAAGATATCAATATCAAATTTGCTCAACGAGCCATATTAAATTGATGGCTTTTGAGCAAGCCGTTAGTTCCGCTAAGTTACAATTAAATGCAACACGAAAAAGCTATATTGGTGGTCAGCGAACGATGGTTGATGTGCTTAATGCGGAAGAGCTTTTATATAGAGCGCAGCAAGATTTAATCAAAGCCAAATATGATTATATTCAAGCTTGGGCATTATTACATCAATATACCAATACTCTAGATATTGAAAAAATAAAAATTATTGAAAACTATTTTCAGTAGCTGAAAATATATATTTAATTTAACTCAATACTATAATAAAAGCCCTATAA