Homologs in group_2931

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14390 FBDBKF_14390 79.2 Morganella morganii S1 dsdA D-serine ammonia-lyase
EHELCC_07890 EHELCC_07890 79.2 Morganella morganii S2 dsdA D-serine ammonia-lyase
NLDBIP_08215 NLDBIP_08215 79.2 Morganella morganii S4 dsdA D-serine ammonia-lyase
LHKJJB_06050 LHKJJB_06050 79.2 Morganella morganii S3 dsdA D-serine ammonia-lyase
HKOGLL_04865 HKOGLL_04865 79.2 Morganella morganii S5 dsdA D-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_2931

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2931

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A1JJW5 0.0 664 74 0 439 3 dsdA D-serine dehydratase Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A7MYG2 0.0 664 73 0 440 3 dsdA Probable D-serine dehydratase Vibrio campbellii (strain ATCC BAA-1116)
Q47V69 0.0 662 72 0 441 3 dsdA Probable D-serine dehydratase Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Q6LHF5 0.0 659 72 0 440 3 dsdA Probable D-serine dehydratase Photobacterium profundum (strain SS9)
Q87QA2 0.0 646 72 0 440 3 dsdA Probable D-serine dehydratase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q7N5H9 0.0 646 72 0 439 3 dsdA D-serine dehydratase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
C3LWD9 0.0 645 72 0 438 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain M66-2)
Q9KL72 0.0 645 72 0 438 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F0M6 0.0 645 72 0 438 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B5YYW7 0.0 640 71 0 441 3 dsdA D-serine dehydratase Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XCK5 0.0 640 71 0 441 3 dsdA D-serine dehydratase Escherichia coli O157:H7
A8ACI7 0.0 640 71 0 441 3 dsdA D-serine dehydratase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q1R2Q6 0.0 640 71 0 441 3 dsdA2 D-serine dehydratase 2 Escherichia coli (strain UTI89 / UPEC)
Q0T953 0.0 640 71 0 441 3 dsdA2 D-serine dehydratase 2 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7N5W6 0.0 640 71 0 441 3 dsdA D-serine dehydratase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q32DH8 0.0 638 71 0 442 3 dsdA D-serine dehydratase Shigella dysenteriae serotype 1 (strain Sd197)
A8A2M0 0.0 638 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O9:H4 (strain HS)
B7M6N5 0.0 638 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O8 (strain IAI1)
A7ZPH2 0.0 638 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O139:H28 (strain E24377A / ETEC)
Q8FFF4 0.0 637 71 0 441 3 dsdA D-serine dehydratase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B7LK20 0.0 637 71 0 442 3 dsdA D-serine dehydratase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A1ADP3 0.0 637 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O1:K1 / APEC
B7MH26 0.0 637 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O45:K1 (strain S88 / ExPEC)
Q1R901 0.0 637 71 0 442 3 dsdA1 D-serine dehydratase 1 Escherichia coli (strain UTI89 / UPEC)
B7MY25 0.0 637 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O81 (strain ED1a)
B7LBR9 0.0 637 71 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain 55989 / EAEC)
Q0TF95 0.0 637 71 0 442 3 dsdA1 D-serine dehydratase 1 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q0T2D1 0.0 636 71 0 442 3 dsdA D-serine dehydratase Shigella flexneri serotype 5b (strain 8401)
B6I6R7 0.0 636 71 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain SE11)
P00926 0.0 636 71 0 442 1 dsdA D-serine dehydratase Escherichia coli (strain K12)
B1IX96 0.0 636 71 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B1X9N9 0.0 636 71 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain K12 / DH10B)
C4ZVQ3 0.0 636 71 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain K12 / MC4100 / BW2952)
A4SPX2 0.0 636 69 0 442 3 dsdA Probable D-serine dehydratase Aeromonas salmonicida (strain A449)
Q3YZG4 0.0 634 70 0 442 3 dsdA D-serine dehydratase Shigella sonnei (strain Ss046)
Q83MK8 0.0 634 70 0 442 3 dsdA D-serine dehydratase Shigella flexneri
B5EY75 0.0 632 71 0 438 3 dsdA D-serine dehydratase Salmonella agona (strain SL483)
A9MWI4 0.0 631 71 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SY68 0.0 631 71 0 438 3 dsdA D-serine dehydratase Salmonella newport (strain SL254)
B4TA53 0.0 631 71 0 438 3 dsdA D-serine dehydratase Salmonella heidelberg (strain SL476)
B5RG23 0.0 631 71 0 438 3 dsdA D-serine dehydratase Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QU31 0.0 631 71 0 438 3 dsdA D-serine dehydratase Salmonella enteritidis PT4 (strain P125109)
B5BII6 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi A (strain AKU_12601)
C0Q241 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi C (strain RKS4594)
Q5PKR3 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57I32 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella choleraesuis (strain SC-B67)
B4TMW9 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella schwarzengrund (strain CVM19633)
B5FMC1 0.0 630 71 0 438 3 dsdA D-serine dehydratase Salmonella dublin (strain CT_02021853)
Q8ZL08 0.0 628 71 0 438 1 dsdA D-serine dehydratase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z2L4 0.0 628 71 0 438 3 dsdA D-serine dehydratase Salmonella typhi
A9MKH2 0.0 626 71 0 438 3 dsdA D-serine dehydratase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A0KI76 0.0 621 69 0 439 3 dsdA Probable D-serine dehydratase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A3M3B1 0.0 615 69 2 443 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
B7I8P7 0.0 613 68 0 442 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain AB0057)
B2HVC6 0.0 609 69 0 438 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain ACICU)
A8GES6 0.0 604 69 0 439 3 dsdA D-serine dehydratase Serratia proteamaculans (strain 568)
Q6FDC1 0.0 592 66 1 442 3 dsdA Probable D-serine dehydratase Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q31YA5 0.0 588 71 0 406 3 dsdA D-serine dehydratase Shigella boydii serotype 4 (strain Sb227)
B0UWV3 0.0 585 67 2 439 3 dsdA Probable D-serine dehydratase Histophilus somni (strain 2336)
Q0I5V1 0.0 585 67 2 439 3 dsdA Probable D-serine dehydratase Histophilus somni (strain 129Pt)
A5W4Y8 0.0 560 63 0 437 3 dsdA Probable D-serine dehydratase Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q9HYN9 0.0 558 64 1 432 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02QJ1 0.0 556 64 1 432 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain UCBPP-PA14)
B7V2Y0 0.0 556 64 1 432 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain LESB58)
A6V271 0.0 553 64 1 432 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain PA7)
B0KGK3 0.0 551 62 0 437 3 dsdA Probable D-serine dehydratase Pseudomonas putida (strain GB-1)
Q73AC5 0.0 550 63 1 437 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ATCC 10987 / NRS 248)
C1EPF1 0.0 549 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain 03BB102)
Q81F73 0.0 549 62 1 437 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q81S85 0.0 547 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus anthracis
C3L7G5 0.0 547 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus anthracis (strain CDC 684 / NRRL 3495)
A0RCF8 0.0 547 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus thuringiensis (strain Al Hakam)
Q6HKG3 0.0 546 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus thuringiensis subsp. konkukian (strain 97-27)
B7IR88 0.0 543 61 1 437 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain G9842)
Q63D23 0.0 543 62 1 438 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ZK / E33L)
A9VPH9 0.0 540 62 2 438 3 dsdA Probable D-serine dehydratase Bacillus mycoides (strain KBAB4)
B7HMG6 0.0 540 62 1 437 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain AH187)
A4XXF3 0.0 539 65 2 438 3 dsdA Probable D-serine dehydratase Pseudomonas mendocina (strain ymp)
Q7NUP9 0.0 537 62 1 438 3 dsdA Probable D-serine dehydratase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
B7HID8 0.0 536 61 1 437 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain B4264)
Q9KC12 0.0 534 61 2 429 3 dsdA Probable D-serine dehydratase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q75TH5 9.57e-176 502 57 2 444 3 dsdA Probable D-serine dehydratase Geobacillus stearothermophilus
Q24WR0 3.8e-172 493 58 2 432 3 dsdA Probable D-serine dehydratase Desulfitobacterium hafniense (strain Y51)
Q75TC9 5.03e-168 482 58 2 422 3 dsdA Probable D-serine dehydratase Geobacillus kaustophilus (strain HTA426)
Q5WGL6 3.69e-165 474 58 2 423 3 dsdA Probable D-serine dehydratase Shouchella clausii (strain KSM-K16)
P54555 1.39e-160 463 56 3 427 3 dsdA Probable D-serine dehydratase Bacillus subtilis (strain 168)
Q3AFZ5 2.87e-160 461 53 2 428 3 dsdA Probable D-serine dehydratase Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q4A041 2.91e-152 442 53 4 439 3 dsdA Probable D-serine dehydratase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q8RFX6 1.03e-151 441 52 4 441 3 dsdA Probable D-serine dehydratase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q03DF6 8.73e-149 433 50 5 440 3 dsdA Probable D-serine dehydratase Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w)
B2GBP8 1.52e-138 407 46 3 441 3 dsdA Probable D-serine dehydratase Limosilactobacillus fermentum (strain NBRC 3956 / LMG 18251)
Q88TY1 8.84e-135 397 46 3 432 3 dsdA Probable D-serine dehydratase Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
Q04G28 4.01e-128 380 46 4 430 3 dsdA Probable D-serine dehydratase Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
B3PYT5 2.89e-126 376 42 2 439 3 dsdA Probable D-serine dehydratase Rhizobium etli (strain CIAT 652)
A6UB95 1.92e-125 374 43 4 434 3 dsdA Probable D-serine dehydratase Sinorhizobium medicae (strain WSM419)
B5ZNC1 2.46e-125 373 44 4 425 3 dsdA Probable D-serine dehydratase Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Q46X58 3.52e-125 373 45 4 428 3 dsdA Probable D-serine dehydratase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
A1VWK8 5.28e-120 360 46 6 427 3 dsdA Probable D-serine dehydratase Polaromonas naphthalenivorans (strain CJ2)
Q396Y3 3.77e-118 355 42 5 435 3 dsdA Probable D-serine dehydratase Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Q2SHX7 2.89e-115 347 48 9 425 3 dsdA Probable D-serine dehydratase Hahella chejuensis (strain KCTC 2396)
Q2T8Q2 1.06e-110 336 42 5 443 3 dsdA Probable D-serine dehydratase Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
B9MIR7 3.83e-104 320 42 7 447 3 dsdA Probable D-serine dehydratase Acidovorax ebreus (strain TPSY)
A1TPW5 4.64e-103 317 45 3 373 3 dsdA Probable D-serine dehydratase Paracidovorax citrulli (strain AAC00-1)
A1W838 1.46e-102 315 42 7 447 3 dsdA Probable D-serine dehydratase Acidovorax sp. (strain JS42)
Q63IF8 1.91e-96 300 41 5 439 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain K96243)
A3P975 3.73e-96 299 41 5 439 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 1106a)
A3NNQ0 4.58e-96 298 41 5 439 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 668)
Q3JJ76 7.04e-96 298 41 5 439 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 1710b)
P25306 8.91e-05 48 24 7 245 1 TD2 Threonine dehydratase 2 biosynthetic, chloroplastic Solanum lycopersicum

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00900
Feature type CDS
Gene -
Product D-serine ammonia-lyase
Location 221530 - 222858 (strand: 1)
Length 1329 (nucleotides) / 442 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2931
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00291 Pyridoxal-phosphate dependent enzyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3048 Amino acid transport and metabolism (E) E D-serine dehydratase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01753 D-serine dehydratase [EC:4.3.1.18] Glycine, serine and threonine metabolism
D-Amino acid metabolism
Metabolic pathways
-

Protein Sequence

MTTIDINKLKNDYPLVRDLVDLKEVVWFNPNVTSTDQGLPYVGLTQNDVMDAQARLQRFAPYLMKAFPETASTEGIIESAVVDIPQMKEALEKRYNTLIEGQLRLKKDSHLPISGSIKARGGIYEVLTHAEKLAIEAGLLTTEDNYEKLFSDEFRKFFSQYSIAVGSTGNLGMSIGIISAKLGFSVSVHMSADARQWKKDKLRAHGVNVVEYEQDYSIAVEQGRKEAEKNPRCFFIDDENSKTLFLGYAVAGLRLKHQFETLNIPVDSEHPLFVYLPCGVGGGPGGVAFGLKLAFGDAVHCLFAEPTHSPCMLLGVYTQLHDGISVQEVGIDNITAADGLAVGRASGFVGRAMERLIDGYYTIDDQELYNLLSLLNKEEGIQLEPSALAGMTGAIHVSQAKDYLQGLSLDSQKMHNATHLVWATGGGMVPTDEMQKYLAQGE

Flanking regions ( +/- flanking 50bp)

CATTAGGGGGCACTTTTATGCTTTCTTTTGTCATATAAAAGAGAATGACGATGACCACGATAGATATAAATAAATTAAAAAATGATTATCCACTGGTACGTGATTTAGTGGATTTAAAAGAGGTGGTTTGGTTTAACCCAAATGTTACCTCAACTGACCAGGGACTTCCTTATGTAGGTTTAACGCAAAATGATGTGATGGATGCACAGGCAAGATTACAACGTTTTGCACCTTATTTAATGAAAGCCTTTCCAGAAACCGCATCAACTGAGGGGATCATCGAATCAGCCGTTGTGGATATCCCTCAAATGAAAGAGGCACTAGAAAAGCGCTATAACACCCTTATTGAGGGACAATTGCGTTTGAAAAAGGACAGCCACTTACCTATTTCTGGTTCAATTAAAGCGCGCGGGGGGATTTATGAAGTGCTCACTCATGCTGAAAAATTAGCCATAGAGGCCGGGCTTCTGACCACAGAGGATAATTATGAAAAATTATTTTCTGATGAATTCCGCAAATTTTTTAGCCAATACAGTATTGCCGTCGGCTCCACGGGTAACTTAGGAATGTCGATTGGCATTATAAGTGCAAAACTGGGCTTTAGCGTTAGTGTTCATATGTCTGCGGATGCTCGTCAATGGAAAAAAGACAAGCTACGCGCTCATGGTGTTAATGTTGTGGAATATGAGCAAGATTACAGTATTGCGGTTGAACAAGGACGTAAAGAGGCAGAAAAAAATCCTCGTTGTTTCTTTATTGATGATGAAAATTCAAAAACATTATTCTTGGGTTATGCCGTCGCTGGATTACGTTTAAAACATCAATTTGAAACGCTTAATATTCCGGTCGATAGTGAACATCCTCTGTTTGTCTATCTGCCATGTGGTGTAGGCGGAGGGCCTGGTGGTGTTGCTTTTGGGTTAAAACTGGCATTTGGTGATGCAGTACATTGTCTATTTGCTGAGCCAACCCATTCTCCTTGTATGTTACTTGGGGTCTATACCCAGTTACATGATGGTATTTCTGTTCAAGAAGTGGGTATCGACAATATTACTGCAGCTGACGGTTTGGCGGTAGGTAGAGCCTCTGGCTTTGTTGGACGGGCAATGGAGCGTTTGATTGATGGCTATTACACCATTGATGATCAAGAGTTATATAACTTATTGAGCTTGTTAAACAAAGAAGAAGGGATCCAGTTAGAGCCTTCCGCTTTAGCAGGAATGACAGGGGCTATTCATGTTTCTCAAGCTAAAGATTATCTACAAGGTTTATCACTTGATAGTCAAAAAATGCACAATGCGACGCATTTAGTATGGGCGACGGGGGGCGGTATGGTGCCAACTGATGAAATGCAAAAATATCTTGCGCAAGGGGAATAGCAACCATATAACAATAAAACAAATAATAACATTATAAAACAAAAGGATAA