Homologs in group_2946

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14390 FBDBKF_14390 100.0 Morganella morganii S1 dsdA D-serine ammonia-lyase
EHELCC_07890 EHELCC_07890 100.0 Morganella morganii S2 dsdA D-serine ammonia-lyase
NLDBIP_08215 NLDBIP_08215 100.0 Morganella morganii S4 dsdA D-serine ammonia-lyase
LHKJJB_06050 LHKJJB_06050 100.0 Morganella morganii S3 dsdA D-serine ammonia-lyase
PMI_RS00900 PMI_RS00900 79.2 Proteus mirabilis HI4320 - D-serine ammonia-lyase

Distribution of the homologs in the orthogroup group_2946

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2946

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A1JJW5 0.0 689 76 0 442 3 dsdA D-serine dehydratase Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A7MYG2 0.0 664 73 0 441 3 dsdA Probable D-serine dehydratase Vibrio campbellii (strain ATCC BAA-1116)
Q87QA2 0.0 654 73 0 441 3 dsdA Probable D-serine dehydratase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
B5YYW7 0.0 654 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XCK5 0.0 654 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O157:H7
Q8FFF4 0.0 652 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A8A2M0 0.0 652 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O9:H4 (strain HS)
B7M6N5 0.0 652 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O8 (strain IAI1)
A7ZPH2 0.0 652 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O139:H28 (strain E24377A / ETEC)
B7N5W6 0.0 652 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q47V69 0.0 652 70 0 441 3 dsdA Probable D-serine dehydratase Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
Q1R2Q6 0.0 652 72 1 444 3 dsdA2 D-serine dehydratase 2 Escherichia coli (strain UTI89 / UPEC)
Q0T953 0.0 652 72 1 444 3 dsdA2 D-serine dehydratase 2 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7MY25 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli O81 (strain ED1a)
B6I6R7 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain SE11)
P00926 0.0 651 72 0 442 1 dsdA D-serine dehydratase Escherichia coli (strain K12)
B1IX96 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B1X9N9 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain K12 / DH10B)
C4ZVQ3 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain K12 / MC4100 / BW2952)
B7LBR9 0.0 651 72 0 442 3 dsdA D-serine dehydratase Escherichia coli (strain 55989 / EAEC)
C3LWD9 0.0 650 72 0 440 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain M66-2)
Q9KL72 0.0 650 72 0 440 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F0M6 0.0 650 72 0 440 3 dsdA Probable D-serine dehydratase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
B7LK20 0.0 650 72 0 442 3 dsdA D-serine dehydratase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q7N5H9 0.0 648 72 0 442 3 dsdA D-serine dehydratase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A8ACI7 0.0 648 72 0 442 3 dsdA D-serine dehydratase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q3YZG4 0.0 647 71 0 442 3 dsdA D-serine dehydratase Shigella sonnei (strain Ss046)
Q32DH8 0.0 647 72 0 442 3 dsdA D-serine dehydratase Shigella dysenteriae serotype 1 (strain Sd197)
Q0T2D1 0.0 647 71 0 442 3 dsdA D-serine dehydratase Shigella flexneri serotype 5b (strain 8401)
Q8ZL08 0.0 646 73 0 438 1 dsdA D-serine dehydratase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q6LHF5 0.0 646 71 0 441 3 dsdA Probable D-serine dehydratase Photobacterium profundum (strain SS9)
Q0TF95 0.0 646 71 0 442 3 dsdA1 D-serine dehydratase 1 Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1ADP3 0.0 645 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O1:K1 / APEC
B7MH26 0.0 645 71 0 442 3 dsdA D-serine dehydratase Escherichia coli O45:K1 (strain S88 / ExPEC)
Q1R901 0.0 645 71 0 442 3 dsdA1 D-serine dehydratase 1 Escherichia coli (strain UTI89 / UPEC)
Q8Z2L4 0.0 644 73 0 438 3 dsdA D-serine dehydratase Salmonella typhi
C0Q241 0.0 644 73 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi C (strain RKS4594)
B5FMC1 0.0 644 73 0 438 3 dsdA D-serine dehydratase Salmonella dublin (strain CT_02021853)
Q57I32 0.0 644 73 0 438 3 dsdA D-serine dehydratase Salmonella choleraesuis (strain SC-B67)
A4SPX2 0.0 644 71 0 442 3 dsdA Probable D-serine dehydratase Aeromonas salmonicida (strain A449)
Q83MK8 0.0 644 71 0 442 3 dsdA D-serine dehydratase Shigella flexneri
A9MWI4 0.0 643 73 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4SY68 0.0 643 73 0 438 3 dsdA D-serine dehydratase Salmonella newport (strain SL254)
B4TA53 0.0 643 73 0 438 3 dsdA D-serine dehydratase Salmonella heidelberg (strain SL476)
B5RG23 0.0 643 73 0 438 3 dsdA D-serine dehydratase Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QU31 0.0 643 73 0 438 3 dsdA D-serine dehydratase Salmonella enteritidis PT4 (strain P125109)
B4TMW9 0.0 642 72 0 438 3 dsdA D-serine dehydratase Salmonella schwarzengrund (strain CVM19633)
B5EY75 0.0 641 72 0 438 3 dsdA D-serine dehydratase Salmonella agona (strain SL483)
B5BII6 0.0 640 72 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi A (strain AKU_12601)
Q5PKR3 0.0 640 72 0 438 3 dsdA D-serine dehydratase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
A8GES6 0.0 636 73 0 442 3 dsdA D-serine dehydratase Serratia proteamaculans (strain 568)
A9MKH2 0.0 634 72 0 438 3 dsdA D-serine dehydratase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
A0KI76 0.0 632 70 0 441 3 dsdA Probable D-serine dehydratase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
B7I8P7 0.0 612 68 0 444 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain AB0057)
A3M3B1 0.0 612 68 0 444 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)
B2HVC6 0.0 607 68 0 444 3 dsdA Probable D-serine dehydratase Acinetobacter baumannii (strain ACICU)
B0UWV3 0.0 604 69 2 436 3 dsdA Probable D-serine dehydratase Histophilus somni (strain 2336)
Q0I5V1 0.0 604 69 2 436 3 dsdA Probable D-serine dehydratase Histophilus somni (strain 129Pt)
Q31YA5 0.0 604 73 0 405 3 dsdA D-serine dehydratase Shigella boydii serotype 4 (strain Sb227)
Q6FDC1 0.0 594 67 1 442 3 dsdA Probable D-serine dehydratase Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q73AC5 0.0 556 64 1 435 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ATCC 10987 / NRS 248)
C1EPF1 0.0 556 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain 03BB102)
Q81S85 0.0 555 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus anthracis
C3L7G5 0.0 555 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus anthracis (strain CDC 684 / NRRL 3495)
Q02QJ1 0.0 555 64 1 434 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain UCBPP-PA14)
A0RCF8 0.0 555 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus thuringiensis (strain Al Hakam)
A5W4Y8 0.0 552 62 0 438 3 dsdA Probable D-serine dehydratase Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
B7V2Y0 0.0 552 64 1 434 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain LESB58)
A6V271 0.0 552 64 1 434 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain PA7)
Q6HKG3 0.0 552 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus thuringiensis subsp. konkukian (strain 97-27)
Q7NUP9 0.0 551 66 1 431 3 dsdA Probable D-serine dehydratase Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / CCUG 213 / NBRC 12614 / NCIMB 9131 / NCTC 9757 / MK)
Q9HYN9 0.0 551 64 1 434 3 dsdA Probable D-serine dehydratase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q63D23 0.0 551 63 1 432 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ZK / E33L)
B0KGK3 0.0 549 62 0 438 3 dsdA Probable D-serine dehydratase Pseudomonas putida (strain GB-1)
Q81F73 0.0 549 64 1 429 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
B7HMG6 0.0 549 64 1 432 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain AH187)
B7IR88 0.0 547 63 1 429 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain G9842)
Q9KC12 0.0 545 62 2 425 3 dsdA Probable D-serine dehydratase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
A9VPH9 0.0 544 63 2 436 3 dsdA Probable D-serine dehydratase Bacillus mycoides (strain KBAB4)
A4XXF3 0.0 543 66 2 433 3 dsdA Probable D-serine dehydratase Pseudomonas mendocina (strain ymp)
B7HID8 0.0 541 63 1 429 3 dsdA Probable D-serine dehydratase Bacillus cereus (strain B4264)
Q75TH5 0.0 518 58 2 443 3 dsdA Probable D-serine dehydratase Geobacillus stearothermophilus
Q75TC9 6.16e-172 492 59 2 421 3 dsdA Probable D-serine dehydratase Geobacillus kaustophilus (strain HTA426)
Q24WR0 2.56e-168 483 58 3 439 3 dsdA Probable D-serine dehydratase Desulfitobacterium hafniense (strain Y51)
Q5WGL6 7.49e-166 476 58 1 431 3 dsdA Probable D-serine dehydratase Shouchella clausii (strain KSM-K16)
P54555 1.44e-162 468 58 3 427 3 dsdA Probable D-serine dehydratase Bacillus subtilis (strain 168)
Q8RFX6 3.92e-160 462 53 4 443 3 dsdA Probable D-serine dehydratase Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355)
Q4A041 1.77e-155 450 54 3 438 3 dsdA Probable D-serine dehydratase Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q3AFZ5 3.34e-155 449 51 2 418 3 dsdA Probable D-serine dehydratase Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q03DF6 4.5e-145 423 49 3 437 3 dsdA Probable D-serine dehydratase Pediococcus pentosaceus (strain ATCC 25745 / CCUG 21536 / LMG 10740 / 183-1w)
B2GBP8 6.86e-141 413 47 4 442 3 dsdA Probable D-serine dehydratase Limosilactobacillus fermentum (strain NBRC 3956 / LMG 18251)
B5ZNC1 2.4e-133 394 45 3 432 3 dsdA Probable D-serine dehydratase Rhizobium leguminosarum bv. trifolii (strain WSM2304)
Q88TY1 4.08e-133 393 48 3 427 3 dsdA Probable D-serine dehydratase Lactiplantibacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
B3PYT5 3.34e-131 389 45 2 418 3 dsdA Probable D-serine dehydratase Rhizobium etli (strain CIAT 652)
Q46X58 2.91e-126 376 46 5 430 3 dsdA Probable D-serine dehydratase Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197)
A1VWK8 9.86e-125 372 50 7 403 3 dsdA Probable D-serine dehydratase Polaromonas naphthalenivorans (strain CJ2)
Q04G28 1.07e-124 372 46 5 428 3 dsdA Probable D-serine dehydratase Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
A6UB95 1.43e-121 364 42 3 434 3 dsdA Probable D-serine dehydratase Sinorhizobium medicae (strain WSM419)
Q396Y3 5.22e-120 360 44 4 429 3 dsdA Probable D-serine dehydratase Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Q2SHX7 2.46e-113 343 49 5 394 3 dsdA Probable D-serine dehydratase Hahella chejuensis (strain KCTC 2396)
B9MIR7 1.14e-109 334 45 8 446 3 dsdA Probable D-serine dehydratase Acidovorax ebreus (strain TPSY)
A1TPW5 1.61e-109 333 49 4 349 3 dsdA Probable D-serine dehydratase Paracidovorax citrulli (strain AAC00-1)
Q2T8Q2 6.43e-109 332 43 6 446 3 dsdA Probable D-serine dehydratase Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
A1W838 6.44e-108 329 45 8 446 3 dsdA Probable D-serine dehydratase Acidovorax sp. (strain JS42)
A3NNQ0 7.07e-95 295 43 7 442 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 668)
Q63IF8 1.73e-94 295 43 7 442 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain K96243)
A3P975 3.19e-94 294 43 7 442 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 1106a)
Q3JJ76 7.89e-94 293 43 7 442 3 dsdA Probable D-serine dehydratase Burkholderia pseudomallei (strain 1710b)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_04865
Feature type CDS
Gene dsdA
Product D-serine ammonia-lyase
Location 21367 - 22701 (strand: 1)
Length 1335 (nucleotides) / 444 (amino acids)
In genomic island -

Contig

Accession ZDB_682
Length 259781 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2946
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00291 Pyridoxal-phosphate dependent enzyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3048 Amino acid transport and metabolism (E) E D-serine dehydratase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01753 D-serine dehydratase [EC:4.3.1.18] Glycine, serine and threonine metabolism
D-Amino acid metabolism
Metabolic pathways		 -

Protein Sequence

MTQINIEKLIADYPLVQKLIDLKQVAWFNPGVTTTEAGLPYVGLTLEDVKDAQARLSRFAPYLMEAFPETQVMQGIIESEAVAIPEMQAALAARYQTPLTGKMYLKKDSHLPISGSIKARGGIYEVLTHAEKLALEAGLLSTGDDYAVLFSDKFRQFFSQYRIAVGSTGNLGMSIGIMSAKLGFSVSVHMSADARQWKKDKLRSHGVNVVEYEQDYSIAVEQGRKEAEKDPSCFFIDDENSSTLFLGYAVAGLRLKTQFAEKGITVDEQHPLFVYLPCGVGGGPGGVAFGLKLAFGDAVHCFFAEPTHSPCMLLGVHTGLHDAISVQEIGIDNITAADGLAVGRASGFVGRAMERLIDGYYTIDDAEMYNLLGLLDQTEAIRLEPSALAGMPGCVHVTRNLAYLQAESLTPERMANATHLVWATGGGMVPEDEMQKYLSQAKGN

Flanking regions ( +/- flanking 50bp)

CGCTGGCCGGCACCTTTGCACTTTCCTATGTGATTTAAAAGAGAGTAATGATGACTCAGATTAATATTGAAAAGTTAATTGCTGACTATCCATTGGTTCAGAAACTGATTGATTTAAAACAGGTGGCATGGTTTAACCCCGGCGTAACCACCACGGAAGCGGGTTTGCCGTATGTGGGACTAACGCTTGAGGATGTGAAGGATGCACAAGCACGCTTAAGCCGCTTTGCCCCGTATCTGATGGAAGCCTTTCCTGAAACACAGGTCATGCAGGGGATCATTGAATCTGAAGCGGTAGCGATTCCGGAGATGCAGGCAGCTCTTGCGGCACGCTATCAGACGCCGCTGACAGGGAAAATGTATCTCAAAAAAGACAGTCATCTGCCGATCTCCGGTTCGATAAAAGCGCGCGGCGGGATCTATGAAGTGCTGACCCATGCGGAAAAATTAGCGCTGGAGGCAGGATTGCTGTCAACCGGTGATGATTATGCGGTGTTATTCTCGGATAAATTCAGGCAGTTTTTCAGTCAGTATCGTATTGCTGTCGGATCAACCGGTAACTTAGGGATGTCCATCGGCATTATGAGCGCGAAGCTGGGTTTCAGTGTCAGTGTGCACATGTCTGCGGATGCCAGACAATGGAAAAAAGACAAATTACGTTCTCATGGTGTCAATGTTGTTGAGTATGAACAGGATTACAGTATCGCGGTGGAGCAGGGACGTAAGGAGGCTGAAAAAGATCCGTCCTGCTTCTTTATTGATGATGAGAACTCCTCCACACTCTTTTTAGGCTATGCGGTGGCGGGCCTGCGGCTGAAAACGCAATTTGCAGAAAAGGGAATTACCGTTGATGAGCAGCATCCGCTGTTTGTGTATTTACCGTGCGGCGTCGGCGGGGGGCCCGGCGGTGTTGCATTCGGATTAAAACTGGCATTTGGTGATGCGGTGCATTGTTTCTTTGCGGAACCGACACATTCACCCTGTATGCTGCTCGGGGTGCATACCGGTCTTCATGATGCCATCTCTGTTCAGGAAATCGGTATTGATAATATTACTGCGGCCGATGGGCTTGCGGTCGGCCGGGCATCCGGATTTGTCGGCCGGGCCATGGAGCGGCTGATCGATGGTTATTACACCATTGATGATGCGGAAATGTATAACCTGCTGGGATTGCTTGATCAGACTGAAGCTATCAGGCTGGAACCTTCTGCTTTAGCGGGCATGCCCGGTTGTGTGCATGTGACCCGGAATCTGGCGTATTTACAGGCTGAATCGCTGACACCGGAACGGATGGCGAATGCCACACATCTGGTCTGGGCAACCGGCGGCGGCATGGTTCCGGAAGATGAGATGCAAAAATATTTATCACAGGCCAAAGGTAACTGACAGGGCGGTGAGCAACTGAACAGACCGGGACCGGCGCGATTGTTGCCGGT