COG3048


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3048, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description D-serine dehydratase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG3048 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2931 FBDBKF_14390 78875 80209 -1 dsdA D-serine ammonia-lyase Morganella morganii S1
1 group_2931 EHELCC_07890 36776 38110 1 dsdA D-serine ammonia-lyase Morganella morganii S2
2 group_2931 NLDBIP_08215 36776 38110 1 dsdA D-serine ammonia-lyase Morganella morganii S4
3 group_2931 LHKJJB_06050 219049 220383 -1 dsdA D-serine ammonia-lyase Morganella morganii S3
4 group_2931 HKOGLL_04865 21367 22701 1 dsdA D-serine ammonia-lyase Morganella morganii S5
5 group_2931 PMI_RS00900 221530 222858 1 D-serine ammonia-lyase Proteus mirabilis HI4320