Homologs in group_1435

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08945 FBDBKF_08945 92.8 Morganella morganii S1 phnA Uncharacterized Zn-ribbon-containing protein
EHELCC_10465 EHELCC_10465 92.8 Morganella morganii S2 phnA Uncharacterized Zn-ribbon-containing protein
NLDBIP_10810 NLDBIP_10810 92.8 Morganella morganii S4 phnA Uncharacterized Zn-ribbon-containing protein
LHKJJB_10545 LHKJJB_10545 92.8 Morganella morganii S3 phnA Uncharacterized Zn-ribbon-containing protein
HKOGLL_13605 HKOGLL_13605 92.8 Morganella morganii S5 phnA Uncharacterized Zn-ribbon-containing protein
F4V73_RS11025 F4V73_RS11025 94.6 Morganella psychrotolerans - zinc ribbon domain-containing protein YjdM

Distribution of the homologs in the orthogroup group_1435

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1435

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFJ4 1.37e-67 201 86 0 111 3 yjdM Protein YjdM Shigella flexneri
P0AFJ1 1.37e-67 201 86 0 111 3 yjdM Protein YjdM Escherichia coli (strain K12)
P0AFJ2 1.37e-67 201 86 0 111 3 yjdM Protein YjdM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFJ3 1.37e-67 201 86 0 111 3 yjdM Protein YjdM Escherichia coli O157:H7
Q02419 2.7e-52 162 72 1 110 3 yjdM Protein YjdM Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P44479 5.21e-41 134 58 2 111 3 yjdM Protein YjdM homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00410
Feature type CDS
Gene -
Product zinc ribbon domain-containing protein YjdM
Location 112855 - 113190 (strand: -1)
Length 336 (nucleotides) / 111 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1435
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03831 PhnA domain
PF08274 PhnA Zinc-Ribbon

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2824 General function prediction only (R) R Uncharacterized Zn-ribbon-containing protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06193 protein PhnA - -

Protein Sequence

MSLPSCPKCNSEYTYEDGAMYVCPECAHEWNDAEPTTDSDELIVKDAHGNLLADGDSVTVIKDLKVKGSSTPLKIGTKVKGIRLVEGDHNIDCKIDGFGQMKLKSEFVKKS

Flanking regions ( +/- flanking 50bp)

TTTGTGACGATTAATCACTTCCCATTTTGAAAAAATTTGAGAGTATTATTATGTCATTACCTTCTTGTCCTAAATGCAACTCAGAGTATACCTATGAAGATGGGGCAATGTATGTCTGCCCTGAATGTGCCCACGAATGGAACGATGCTGAGCCAACAACTGATAGCGATGAGCTGATTGTTAAAGATGCCCATGGTAATTTATTAGCCGATGGGGATTCAGTGACAGTCATTAAAGATCTAAAAGTAAAAGGTAGCTCAACGCCACTCAAAATTGGTACAAAAGTTAAAGGGATACGTTTAGTGGAAGGCGATCATAATATTGATTGTAAAATTGATGGCTTTGGACAAATGAAATTAAAATCTGAATTTGTGAAGAAAAGCTAATCTTGAATTATCATTAAAATGATTAATAACATTATTTTGATTTCAGAGGC