Homologs in group_1435

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08945 FBDBKF_08945 100.0 Morganella morganii S1 phnA Uncharacterized Zn-ribbon-containing protein
EHELCC_10465 EHELCC_10465 100.0 Morganella morganii S2 phnA Uncharacterized Zn-ribbon-containing protein
NLDBIP_10810 NLDBIP_10810 100.0 Morganella morganii S4 phnA Uncharacterized Zn-ribbon-containing protein
LHKJJB_10545 LHKJJB_10545 100.0 Morganella morganii S3 phnA Uncharacterized Zn-ribbon-containing protein
F4V73_RS11025 F4V73_RS11025 96.4 Morganella psychrotolerans - zinc ribbon domain-containing protein YjdM
PMI_RS00410 PMI_RS00410 92.8 Proteus mirabilis HI4320 - zinc ribbon domain-containing protein YjdM

Distribution of the homologs in the orthogroup group_1435

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1435

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFJ4 1.55e-71 211 90 0 111 3 yjdM Protein YjdM Shigella flexneri
P0AFJ1 1.55e-71 211 90 0 111 3 yjdM Protein YjdM Escherichia coli (strain K12)
P0AFJ2 1.55e-71 211 90 0 111 3 yjdM Protein YjdM Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFJ3 1.55e-71 211 90 0 111 3 yjdM Protein YjdM Escherichia coli O157:H7
Q02419 6.02e-53 164 74 1 110 3 yjdM Protein YjdM Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
P44479 4.88e-41 134 59 2 110 3 yjdM Protein YjdM homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_13605
Feature type CDS
Gene phnA
Product Uncharacterized Zn-ribbon-containing protein
Location 7527 - 7862 (strand: 1)
Length 336 (nucleotides) / 111 (amino acids)

Contig

Accession ZDB_692
Length 124746 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1435
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03831 PhnA domain
PF08274 PhnA Zinc-Ribbon

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2824 General function prediction only (R) R Uncharacterized Zn-ribbon-containing protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06193 protein PhnA - -

Protein Sequence

MSLPSCPKCNSEYTYEDGAMYVCPECAHEWNDAEPAAESDELIVKDANGNLLADGDAVTVIKDLKVKGSSSMLKIGTKVKGIRLVEGDHNIDCKIDGFGQMKLKSEFVKKN

Flanking regions ( +/- flanking 50bp)

ATCGTGTGACAATTTGCTGCTCCCCATTGTGAAAATCTGAGAGTCTCATTATGTCATTACCTTCATGTCCGAAATGTAATTCTGAATACACCTATGAAGACGGTGCAATGTATGTGTGCCCTGAATGTGCCCACGAATGGAATGATGCCGAACCGGCAGCGGAAAGTGACGAACTGATCGTCAAAGACGCAAACGGTAATTTACTGGCAGACGGCGATGCCGTGACAGTCATCAAAGACCTGAAAGTCAAAGGCAGCTCATCCATGCTGAAAATCGGCACAAAAGTCAAAGGGATCCGTTTAGTGGAAGGTGACCACAATATTGATTGTAAAATCGATGGCTTTGGTCAGATGAAACTGAAATCTGAGTTTGTGAAAAAGAACTGATGTTCTGATATAAGATTGCTGACAAAATCCCGGCCTGTTTTTTCCCGGAC