Homologs in group_2310

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17490 FBDBKF_17490 81.1 Morganella morganii S1 hypD hydrogenase formation protein HypD
EHELCC_17385 EHELCC_17385 81.1 Morganella morganii S2 hypD hydrogenase formation protein HypD
NLDBIP_17810 NLDBIP_17810 81.1 Morganella morganii S4 hypD hydrogenase formation protein HypD
LHKJJB_17730 LHKJJB_17730 81.1 Morganella morganii S3 hypD hydrogenase formation protein HypD
HKOGLL_17740 HKOGLL_17740 81.1 Morganella morganii S5 hypD hydrogenase formation protein HypD
F4V73_RS16665 F4V73_RS16665 80.3 Morganella psychrotolerans hypD hydrogenase formation protein HypD

Distribution of the homologs in the orthogroup group_2310

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2310

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24192 0.0 525 64 1 375 1 hypD Hydrogenase maturation factor HypD Escherichia coli (strain K12)
P26411 2.13e-153 440 56 3 376 1 hypD Hydrogenase maturation factor HypD Rhodobacter capsulatus
P31904 2.34e-139 404 50 4 381 3 hypD2 Hydrogenase maturation factor HypD2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P40598 3.67e-134 391 51 5 381 3 hypD Hydrogenase maturation factor HypD Rhizobium leguminosarum bv. viciae
Q9ANP1 5.49e-132 385 49 4 381 3 hypD1 Hydrogenase maturation factor HypD1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P31903 3.16e-126 371 47 6 389 3 hypD Hydrogenase maturation factor HypD Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P42033 1.18e-125 369 49 5 382 3 hupD Hydrogenase expression/formation protein HupD Azotobacter chroococcum mcd 1
P31882 1.26e-120 357 48 5 382 3 hypD Hydrogenase maturation factor HypD Azotobacter vinelandii
Q58400 5.13e-84 262 40 8 364 3 MJ0993 Putative hydrogenase expression/formation protein MJ0993 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00190
Feature type CDS
Gene hypD
Product hydrogenase formation protein HypD
Location 60859 - 61995 (strand: 1)
Length 1137 (nucleotides) / 378 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2310
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01924 Hydrogenase formation hypA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0409 Posttranslational modification, protein turnover, chaperones (O) O Hydrogenase maturation factor HypD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04654 hydrogenase expression/formation protein HypD - -

Protein Sequence

MQYVDEFRDPELAKALLAQIRETISQWPHPITRPLQIMEVCGGHTHAIFKFGLDRLLPQEIEFVHGPGCPVCVLPMGRIDACLEIAARPEVIFCTFGDAMRVPGRHGSMLDARRRGSDIRIVYSPLDSLKIAQDNPDKQVVFFGLGFETTMPSTAMTLQQAKLRGLKNFSLFCQHITIVPTLRCLLEQEDVRIDGFIAPGHVSMVIGCTPYQPLCDEFEKPFVVTGFEPLDLLQAILMVVKQLKAKAENADYVLSIENQYSRIVPNEGNKLAQKALKDVFMLKESSEWRGLGEIPMSGIQLTPAYAEFDAERRFTPAPQQVADNPQSRCGDVLTGRCKPSDCPLFGKSCTPETALGALMVSSEGACAAYYQYRREGNI

Flanking regions ( +/- flanking 50bp)

TCTGGATGCATTACAACATGTATATGGTGTTACCCTTGAAGAGGCTGATGATGCAATACGTTGATGAATTTCGTGATCCCGAATTGGCCAAAGCATTATTAGCTCAAATACGTGAAACTATTTCACAATGGCCCCATCCCATCACTCGTCCATTACAGATTATGGAAGTGTGTGGCGGACATACGCATGCCATTTTTAAATTTGGTCTCGACCGCTTATTACCACAAGAGATTGAGTTTGTTCATGGTCCCGGTTGCCCGGTATGTGTGTTACCTATGGGGCGCATTGATGCTTGCTTAGAAATTGCAGCCCGTCCAGAAGTCATTTTCTGTACTTTCGGTGATGCGATGCGGGTGCCCGGTCGTCATGGTTCAATGCTTGATGCTCGTCGTCGCGGTAGTGATATCCGTATTGTTTACTCACCGCTTGATTCATTAAAAATTGCGCAAGATAACCCTGATAAACAAGTGGTATTTTTTGGCTTAGGTTTTGAAACTACCATGCCAAGTACGGCGATGACACTGCAACAAGCGAAATTACGTGGACTGAAAAATTTTTCGCTATTTTGTCAGCACATTACTATCGTACCGACTTTACGTTGCTTATTAGAGCAAGAAGATGTACGTATTGATGGTTTTATTGCCCCCGGTCATGTCAGTATGGTGATTGGCTGCACGCCTTATCAACCTTTATGTGATGAATTTGAAAAACCCTTTGTGGTGACAGGTTTTGAACCGTTGGATTTATTACAAGCTATACTGATGGTAGTAAAACAGCTTAAAGCAAAAGCTGAGAATGCAGATTATGTTTTAAGTATTGAAAATCAATATAGTCGTATTGTCCCTAATGAAGGCAATAAACTTGCGCAAAAAGCATTGAAAGATGTTTTTATGCTAAAAGAGAGCAGTGAATGGCGTGGACTTGGGGAGATCCCTATGTCTGGTATTCAACTAACACCCGCTTATGCTGAGTTTGACGCTGAACGACGTTTTACACCAGCACCACAACAAGTGGCTGATAATCCACAATCACGCTGTGGCGATGTATTAACCGGACGATGCAAACCTTCTGATTGCCCATTATTTGGTAAAAGTTGTACACCAGAAACGGCATTAGGTGCCTTAATGGTGTCATCAGAAGGTGCATGTGCGGCTTATTATCAGTATCGCCGTGAAGGTAATATATGAAACAACCTGATGAAATCACCTTAGCTCAAGGAAATGGTGGGCAAGGTATG