Homologs in group_2275

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17490 FBDBKF_17490 100.0 Morganella morganii S1 hypD hydrogenase formation protein HypD
NLDBIP_17810 NLDBIP_17810 100.0 Morganella morganii S4 hypD hydrogenase formation protein HypD
LHKJJB_17730 LHKJJB_17730 100.0 Morganella morganii S3 hypD hydrogenase formation protein HypD
HKOGLL_17740 HKOGLL_17740 100.0 Morganella morganii S5 hypD hydrogenase formation protein HypD
F4V73_RS16665 F4V73_RS16665 94.1 Morganella psychrotolerans hypD hydrogenase formation protein HypD
PMI_RS00190 PMI_RS00190 81.1 Proteus mirabilis HI4320 hypD hydrogenase formation protein HypD

Distribution of the homologs in the orthogroup group_2275

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2275

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24192 0.0 510 64 2 376 1 hypD Hydrogenase maturation factor HypD Escherichia coli (strain K12)
P26411 7.94e-151 433 55 2 376 1 hypD Hydrogenase maturation factor HypD Rhodobacter capsulatus
P31904 1.11e-137 400 51 4 381 3 hypD2 Hydrogenase maturation factor HypD2 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
Q9ANP1 3.28e-129 379 48 4 381 3 hypD1 Hydrogenase maturation factor HypD1 Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P40598 3.48e-126 371 50 5 381 3 hypD Hydrogenase maturation factor HypD Rhizobium leguminosarum bv. viciae
P31903 3.17e-123 363 48 4 381 3 hypD Hydrogenase maturation factor HypD Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P42033 6.58e-123 362 49 5 380 3 hupD Hydrogenase expression/formation protein HupD Azotobacter chroococcum mcd 1
P31882 1.22e-122 362 49 5 380 3 hypD Hydrogenase maturation factor HypD Azotobacter vinelandii
Q58400 4.95e-86 268 39 7 369 3 MJ0993 Putative hydrogenase expression/formation protein MJ0993 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_17385
Feature type CDS
Gene hypD
Product hydrogenase formation protein HypD
Location 32079 - 33209 (strand: -1)
Length 1131 (nucleotides) / 376 (amino acids)

Contig

Accession ZDB_232
Length 42791 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2275
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01924 Hydrogenase formation hypA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0409 Posttranslational modification, protein turnover, chaperones (O) O Hydrogenase maturation factor HypD

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04654 hydrogenase expression/formation protein HypD - -

Protein Sequence

MRFVDEFRDPALAEKLLAQIREEMASWPHPLKQPLQIMEVCGGHTHAIFKFGLDKLLPDSVEFVHGPGCPVCVLPMGRIDACLEIAARPGVIFCTFGDAMRVPGRGGSLLDARRHGSDIRIVYSPLDALTIARDNPDKEVVFFALGFETTMPGTAATLQLAKKSGLINFTVFCQHITIIPTLRTLLEQKDVFIDGFIAPGHVSMVIGCTPYQPLCDEFAKPFVVTGFEPLDLLTAILMVIRQLKKQAQDNYAPMAVENQYSRIVPEQGNLLAQKALAEVFELKASSEWRGLGNIEDSGIQLTPAYHEFDAERRFRPQPQSVADNPQARCGDVLTGRCKPADCPLFGNACTPETALGALMVSSEGACAAYYQYRRGE

Flanking regions ( +/- flanking 50bp)

GCCTGAGCAAGGTGAATCAGCAGCGTGGTGCGGCGGAATAAGGGATTTTTATGCGTTTTGTTGATGAGTTCCGTGATCCTGCTCTGGCAGAAAAACTGCTGGCACAGATCCGGGAAGAGATGGCTTCGTGGCCGCATCCGCTGAAACAGCCTTTGCAGATTATGGAGGTGTGCGGCGGCCATACTCACGCCATCTTTAAATTCGGGCTGGATAAACTGCTGCCTGATTCAGTGGAATTTGTTCACGGACCGGGTTGCCCGGTTTGTGTGCTGCCGATGGGGCGTATTGATGCCTGCCTGGAAATCGCGGCCCGTCCGGGCGTGATTTTCTGCACTTTCGGGGATGCCATGCGTGTTCCCGGTCGCGGCGGTTCGCTGCTGGATGCCCGCCGTCACGGCAGCGACATCCGCATTGTCTATTCCCCGCTGGATGCACTGACTATTGCCCGCGATAATCCGGATAAAGAGGTCGTCTTCTTCGCCCTTGGTTTTGAAACCACCATGCCGGGTACGGCGGCCACGTTACAGCTGGCGAAAAAAAGCGGACTGATAAATTTCACCGTTTTTTGTCAGCACATCACCATTATCCCGACGCTGCGCACACTGCTGGAGCAGAAAGATGTGTTTATCGACGGCTTTATCGCGCCGGGGCACGTCAGTATGGTGATTGGCTGCACGCCGTATCAGCCGCTGTGTGATGAATTCGCCAAACCGTTTGTGGTGACCGGCTTTGAGCCGCTGGATCTGCTGACAGCTATTCTGATGGTTATCCGCCAGCTGAAGAAACAGGCACAGGATAACTACGCGCCGATGGCGGTGGAAAATCAGTACAGCCGCATTGTGCCGGAGCAGGGTAACCTGCTGGCACAGAAAGCACTGGCGGAAGTCTTTGAACTGAAAGCCAGCAGTGAATGGCGCGGGCTCGGCAATATCGAGGACTCCGGTATCCAACTGACACCGGCTTACCATGAATTTGATGCTGAACGCCGCTTCCGGCCGCAACCGCAGTCTGTTGCCGATAACCCGCAGGCCCGTTGCGGGGACGTATTAACAGGCCGCTGCAAACCGGCGGACTGTCCGCTGTTCGGCAACGCATGCACACCGGAAACGGCACTCGGCGCACTGATGGTCTCCTCTGAAGGCGCTTGCGCAGCTTATTATCAGTACCGGCGCGGAGAATAACATGAAACCTATTACTGAAATCACCCTGGCCCAGGGCAACGGCGGACAGG