COG0409


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0409, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Hydrogenase maturation factor HypD
Function(s) descr. Posttranslational modification, protein turnover, chaperones (O)

Occurence in the database

COG0409 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2275 FBDBKF_17490 32079 33209 -1 hypD hydrogenase formation protein HypD Morganella morganii S1
1 group_2275 EHELCC_17385 32079 33209 -1 hypD hydrogenase formation protein HypD Morganella morganii S2
2 group_2275 NLDBIP_17810 9587 10717 1 hypD hydrogenase formation protein HypD Morganella morganii S4
3 group_2275 LHKJJB_17730 9585 10715 1 hypD hydrogenase formation protein HypD Morganella morganii S3
4 group_2275 HKOGLL_17740 9585 10715 1 hypD hydrogenase formation protein HypD Morganella morganii S5
5 group_2275 F4V73_RS16665 155987 157117 -1 hypD hydrogenase formation protein HypD Morganella psychrotolerans
6 group_2275 PMI_RS00190 60859 61995 1 hypD hydrogenase formation protein HypD Proteus mirabilis HI4320