Homologs in group_2403

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19265 FBDBKF_19265 74.3 Morganella morganii S1 hybO hydrogenase 2 small subunit
EHELCC_07550 EHELCC_07550 74.3 Morganella morganii S2 hybO hydrogenase 2 small subunit
NLDBIP_07875 NLDBIP_07875 74.3 Morganella morganii S4 hybO hydrogenase 2 small subunit
LHKJJB_07410 LHKJJB_07410 74.3 Morganella morganii S3 hybO hydrogenase 2 small subunit
HKOGLL_03520 HKOGLL_03520 74.3 Morganella morganii S5 hybO hydrogenase 2 small subunit
F4V73_RS12025 F4V73_RS12025 74.6 Morganella psychrotolerans hybO hydrogenase 2 small subunit

Distribution of the homologs in the orthogroup group_2403

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2403

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69741 0.0 566 79 1 369 1 hybO Hydrogenase-2 small chain Escherichia coli (strain K12)
P69742 0.0 566 79 1 369 3 hybO Hydrogenase-2 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P69743 0.0 566 79 1 369 3 hybO Hydrogenase-2 small chain Escherichia coli O157:H7
P18637 1.97e-95 291 43 3 330 3 hupA Uptake hydrogenase small subunit Rhizobium leguminosarum bv. viciae
P12635 1.79e-90 279 42 3 312 3 hupA Uptake hydrogenase small subunit Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
P33375 2.03e-89 276 40 3 312 3 hupS Uptake hydrogenase small subunit Alcaligenes hydrogenophilus
P31884 3.03e-89 275 44 4 351 1 hydA Quinone-reactive Ni/Fe-hydrogenase small chain Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P31892 1.53e-88 274 41 2 303 1 hoxK Uptake hydrogenase small subunit Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P18187 4.77e-87 268 48 4 289 1 hydA Periplasmic [NiFe] hydrogenase small subunit Solidesulfovibrio fructosivorans
P21950 5.11e-86 267 41 2 303 1 hoxK Uptake hydrogenase small subunit Azotobacter vinelandii
Q06173 9.08e-86 265 43 3 303 1 hynB1 Periplasmic [NiFe] hydrogenase small subunit 1 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
O33405 4.51e-84 263 40 3 312 1 hoxS Uptake hydrogenase small subunit Afipia carboxidovorans (strain ATCC 49405 / DSM 1227 / KCTC 32145 / OM5)
P17633 1.26e-83 261 39 4 317 3 hupA Uptake hydrogenase small subunit Rubrivivax gelatinosus
P21853 4.04e-83 258 44 3 293 1 hydA Periplasmic [NiFe] hydrogenase small subunit Nitratidesulfovibrio vulgaris (strain DSM 19637 / Miyazaki F)
Q83RW9 2.37e-81 256 40 2 303 3 hyaA Hydrogenase-1 small chain Shigella flexneri
P69739 2.97e-81 256 40 2 303 1 hyaA Hydrogenase-1 small chain Escherichia coli (strain K12)
P69740 2.97e-81 256 40 2 303 3 hyaA Hydrogenase-1 small chain Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P12943 8.44e-81 251 43 4 282 1 hydA Periplasmic [NiFe] hydrogenase small subunit Megalodesulfovibrio gigas
Q46045 1.2e-80 254 38 5 355 3 hyaA Hydrogenase-1 small chain Citrobacter freundii
P15283 1.78e-79 251 40 1 295 3 hupA Uptake hydrogenase small subunit Rhodobacter capsulatus
P18190 1.01e-78 248 39 4 303 3 hupA Uptake hydrogenase small subunit Azotobacter chroococcum mcd 1
P61429 1.42e-77 244 42 5 290 3 hynB2 Periplasmic [NiFe] hydrogenase small subunit 2 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P13061 1.52e-74 236 41 5 297 1 hydA Periplasmic [NiFe] hydrogenase small subunit Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949 / MB)
P13063 1.34e-57 193 37 6 281 1 None Periplasmic [NiFeSe] hydrogenase small subunit Desulfomicrobium baculatum
Q50225 8.59e-40 148 34 15 330 2 vhtG F420 non-reducing hydrogenase II small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q50248 1.72e-38 144 33 15 330 2 vhoG F420 non-reducing hydrogenase I small subunit Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
Q11VB3 0.000515 43 25 3 109 3 nuoB2 NADH-quinone oxidoreductase subunit B 2 Cytophaga hutchinsonii (strain ATCC 33406 / DSM 1761 / CIP 103989 / NBRC 15051 / NCIMB 9469 / D465)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00150
Feature type CDS
Gene hybO
Product hydrogenase 2 small subunit
Location 53376 - 54500 (strand: 1)
Length 1125 (nucleotides) / 374 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2403
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit
PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1740 Energy production and conversion (C) C Ni,Fe-hydrogenase I small subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06282 hydrogenase small subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Protein Sequence

MALGNNVFSQHGINRRDFMKLCAALSATMGLSGKAAAQMSQAMTSPERPPVIWIGAQECTGCTESLLRATHPTLENLVLDVIALEYHEVLSSAFGYQAEENKHNAMEKYKGKYVLVVDGSIPDKDGGIYCMVAGKPILEHIKEAAEGAAAIIAIGSCSAWGGVPASGGNPTGAKSLEAILPGKTVINIPGCPPNPHNFLATVAHIITFNSLPKLDSKNRPLFAYERLIHENCERRPHFDAGRFAKEFGDEGHRQGWCLYHLGCKGPETYGNCPTLEFCDIGGGIWPVGIGHPCYGCNEEGVGFTKGIFQLANVYQPTPKAQVPDVNAKEGGGVSYGAAGLLGAVVGAVAGVSVMAVRQLGRDKNTTGASQEDKR

Flanking regions ( +/- flanking 50bp)

CGGTGTTTTAAAATTATTCCAATTAAAAATCATCATATCAGGAGAGATATATGGCCTTGGGGAATAATGTTTTTTCCCAACATGGTATTAACCGACGCGATTTTATGAAATTGTGCGCAGCGTTATCAGCTACCATGGGATTAAGCGGCAAAGCAGCCGCGCAAATGTCACAAGCAATGACATCACCTGAACGTCCACCTGTTATTTGGATTGGTGCTCAAGAGTGTACAGGTTGTACGGAATCTTTATTACGTGCGACTCACCCAACACTTGAAAACCTTGTTCTGGATGTTATCGCACTTGAATATCACGAAGTGCTCTCTTCCGCTTTTGGTTATCAAGCAGAAGAAAACAAACATAATGCGATGGAGAAATACAAAGGTAAATACGTCCTTGTTGTCGACGGTTCTATCCCTGACAAAGATGGCGGTATTTACTGTATGGTGGCAGGCAAACCTATTCTTGAGCATATCAAAGAAGCCGCTGAAGGTGCGGCGGCAATTATTGCTATCGGTTCTTGTTCTGCATGGGGTGGTGTGCCAGCTTCTGGAGGTAACCCTACTGGCGCTAAATCACTGGAAGCTATTTTACCGGGTAAAACAGTTATCAATATTCCAGGGTGTCCACCAAACCCACATAACTTCTTAGCTACAGTTGCACATATTATTACCTTTAATTCATTACCTAAGTTAGATAGCAAAAATAGACCGCTATTTGCATATGAGCGTCTAATACATGAAAACTGTGAACGCCGTCCTCATTTTGATGCGGGTCGTTTTGCTAAAGAATTTGGTGATGAAGGACACCGCCAAGGCTGGTGCTTATACCATTTAGGTTGTAAAGGACCTGAAACTTACGGTAACTGCCCAACATTAGAGTTTTGCGATATTGGTGGAGGAATTTGGCCTGTTGGTATTGGTCACCCTTGCTATGGCTGTAATGAAGAGGGTGTCGGATTTACGAAAGGTATTTTCCAACTTGCGAATGTTTATCAGCCAACACCAAAAGCACAAGTACCCGATGTTAACGCCAAAGAAGGTGGTGGTGTTTCTTATGGTGCAGCAGGCTTATTAGGTGCAGTTGTTGGTGCTGTTGCTGGGGTAAGTGTGATGGCTGTGCGTCAATTAGGCCGTGACAAAAATACCACAGGAGCCTCACAGGAGGATAAACGGTGAATAGGCGTCATTTCTTTAAGCTGGCATCAGGTGGGGTTCTCCTTGCGGGA