Orthogroup:group_2403


Homologs in group_2403

Help

7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_19265 FBDBKF_19265 Morganella morganii S1 hybO hydrogenase 2 small subunit
EHELCC_07550 EHELCC_07550 Morganella morganii S2 hybO hydrogenase 2 small subunit
NLDBIP_07875 NLDBIP_07875 Morganella morganii S4 hybO hydrogenase 2 small subunit
LHKJJB_07410 LHKJJB_07410 Morganella morganii S3 hybO hydrogenase 2 small subunit
HKOGLL_03520 HKOGLL_03520 Morganella morganii S5 hybO hydrogenase 2 small subunit
F4V73_RS12025 F4V73_RS12025 Morganella psychrotolerans hybO hydrogenase 2 small subunit
PMI_RS00150 PMI_RS00150 Proteus mirabilis HI4320 hybO hydrogenase 2 small subunit

Distribution of group_2403 homologs

Help

Number of homologs in each genome (first column and blue bar chart)

Download SVG

Phylogeny of group_2403 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2403

Orthogroup content: 7 members

Help

This page summarizes the annotation of all members of the orthologous group group_2403.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hybO 7

Product

# Product Occurence
1 hydrogenase 2 small subunit 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1740 7 C Energy production and conversion (C) Ni,Fe-hydrogenase I small subunit

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06282 7 hydrogenase small subunit [EC:1.12.99.6] Nitrotoluene degradation
Microbial metabolism in diverse environments
Two-component system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01058 7 NADH ubiquinone oxidoreductase, 20 Kd subunit
PF14720 7 NiFe/NiFeSe hydrogenase small subunit C-terminal

Annotations of the 27 SwissProt hits

Annotation Number of occurrences
F420 non-reducing hydrogenase I small subunit 1
F420 non-reducing hydrogenase II small subunit 1
Hydrogenase-1 small chain 4
Hydrogenase-2 small chain 3
NADH-quinone oxidoreductase subunit B 2 1
Periplasmic [NiFeSe] hydrogenase small subunit 1
Periplasmic [NiFe] hydrogenase small subunit 4
Periplasmic [NiFe] hydrogenase small subunit 1 1
Periplasmic [NiFe] hydrogenase small subunit 2 1
Quinone-reactive Ni/Fe-hydrogenase small chain 1
Uptake hydrogenase small subunit 9

Protein length

Min length 373
Max length 377
Mean length (sd) 376.0 (1.7)
Median length 377.0

Protein length distribution