Homologs in group_3056

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18265 FBDBKF_18265 100.0 Morganella morganii S1 hgdB double-cubane-cluster-containing anaerobic reductase
EHELCC_18300 EHELCC_18300 100.0 Morganella morganii S2 hgdB double-cubane-cluster-containing anaerobic reductase
LHKJJB_18420 LHKJJB_18420 100.0 Morganella morganii S3 hgdB double-cubane-cluster-containing anaerobic reductase
HKOGLL_18155 HKOGLL_18155 100.0 Morganella morganii S5 hgdB double-cubane-cluster-containing anaerobic reductase
F4V73_RS01790 F4V73_RS01790 97.1 Morganella psychrotolerans - double-cubane-cluster-containing anaerobic reductase

Distribution of the homologs in the orthogroup group_3056

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3056

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39384 0.0 654 78 1 385 3 yjiM Putative dehydratase subunit YjiM Escherichia coli (strain K12)
Q60318 3.14e-76 243 38 6 385 3 MJ0007 Putative dehydratase subunit MJ0007 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q93AL8 6.47e-19 90 24 14 389 1 fldC (R)-phenyllactyl-CoA dehydratase beta subunit Clostridium sporogenes
Q5U923 1.88e-16 83 25 14 368 1 hadC (R)-2-hydroxyisocaproyl-CoA dehydratase beta subunit Clostridioides difficile
P11570 9.31e-09 60 22 9 368 1 hgdB (R)-2-hydroxyglutaryl-CoA dehydratase, subunit beta Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / CCUG 9996 / CIP 106432 / VR4)
G3KIM3 2.25e-08 58 21 9 364 1 lcdB Lactoyl-CoA dehydratase subunit beta (Fragment) Anaerotignum propionicum
O87875 0.000551 45 20 3 148 1 bcrB Benzoyl-CoA reductase subunit B Thauera aromatica

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_18225
Feature type CDS
Gene hgdB
Product double-cubane-cluster-containing anaerobic reductase
Location 16647 - 17804 (strand: 1)
Length 1158 (nucleotides) / 385 (amino acids)

Contig

Accession ZDB_540
Length 35191 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3056
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1775 Amino acid transport and metabolism (E)
Secondary metabolites biosynthesis, transport and catabolism (Q)		 EQ Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Protein Sequence

MSLVTQLPSIFSDFSDARQQGFLTVMELKEQGVPLVGTYCTFMPQEIAMAAGAAVVSLCSTSDETIEEAEKTLPRNLCPLIKSSYGFGKTDKCPYFYFSDIVVGETTCDGKKKMYEYMAEFKPVHVMQLPNNSESAESVALWRSEIIRFQKRLEEQFGCEITEQGIRDAIDLRNRERRALTEFYRLGQLNPPAMTGREILSVVYGATFKFDKRALIGELETLTAKVRAEYAAGKRLDPRPRILITGCPIGGAAEKVVRIIEENGGWVVGYENCTGAKATEQCVDENPQADVYDALTEKYLAIGCSCISPNTQRLNMLSEMVQDYQVDGVIDVILQACHTYAVESLLINRHIREKHDIPYMAIETDYSTSDTGQLATRIAAFIEML

Flanking regions ( +/- flanking 50bp)

TAGGTCTACTCTGGCGCCACACTTTAATAATGATAATGGTAGGTCTACTTATGTCATTAGTCACACAACTTCCGTCGATCTTTTCTGATTTCTCCGATGCCCGCCAACAGGGCTTTCTCACTGTAATGGAACTGAAAGAGCAGGGTGTCCCGCTGGTGGGAACCTATTGCACTTTTATGCCGCAGGAGATTGCTATGGCCGCCGGTGCAGCGGTTGTCTCCCTCTGTTCAACCAGTGATGAAACCATTGAAGAAGCGGAAAAAACCTTACCCCGCAACTTATGTCCTCTGATCAAAAGCAGCTACGGATTCGGTAAAACCGATAAATGCCCCTACTTCTATTTTTCTGACATCGTGGTCGGTGAAACCACCTGCGACGGCAAAAAGAAAATGTATGAATATATGGCGGAATTTAAACCTGTCCATGTGATGCAACTGCCGAATAACAGTGAAAGTGCGGAATCTGTCGCGCTCTGGCGCTCGGAAATCATCCGTTTTCAGAAACGGCTGGAAGAGCAGTTCGGCTGTGAAATTACAGAACAGGGGATCCGCGATGCAATTGATTTACGCAACCGCGAACGCCGCGCATTAACCGAATTTTACCGCCTCGGGCAGCTCAATCCGCCAGCCATGACCGGCCGTGAGATCCTCAGTGTGGTCTATGGTGCTACTTTCAAATTTGATAAACGCGCTCTGATCGGCGAGCTGGAAACGCTGACCGCCAAAGTGCGTGCGGAATATGCTGCCGGTAAACGGCTGGATCCGCGTCCGCGCATTCTGATCACCGGCTGCCCGATTGGCGGGGCGGCGGAAAAAGTGGTGCGGATTATCGAAGAGAACGGCGGCTGGGTGGTCGGTTATGAAAACTGCACAGGCGCGAAAGCCACTGAACAGTGTGTGGATGAAAATCCGCAGGCCGATGTTTATGATGCCCTGACCGAAAAATACCTTGCTATCGGTTGCTCCTGTATTTCACCGAACACACAGCGTCTGAATATGCTCAGTGAGATGGTGCAGGACTATCAGGTGGACGGGGTGATTGATGTGATCCTCCAGGCCTGTCACACCTATGCGGTGGAATCGCTGCTGATAAACCGGCATATCCGTGAAAAACACGATATTCCGTATATGGCGATTGAGACAGATTATTCCACCTCTGACACCGGTCAGCTTGCTACCCGCATTGCCGCCTTTATTGAGATGTTATAAGGAGGCGTCATGCTGAGTATCGGTATTGACTCGGGCTCGACGGCCACCAA