Homologs in group_1416

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08750 FBDBKF_08750 100.0 Morganella morganii S1 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
EHELCC_12775 EHELCC_12775 100.0 Morganella morganii S2 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
LHKJJB_13440 LHKJJB_13440 100.0 Morganella morganii S3 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
HKOGLL_11590 HKOGLL_11590 100.0 Morganella morganii S5 rlhA 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
F4V73_RS09965 F4V73_RS09965 96.1 Morganella psychrotolerans - peptidase U32 family protein
PMI_RS17155 PMI_RS17155 86.7 Proteus mirabilis HI4320 - peptidase U32 family protein

Distribution of the homologs in the orthogroup group_1416

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1416

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45527 0.0 622 88 0 331 1 ubiU Ubiquinone biosynthesis protein UbiU Escherichia coli (strain K12)
Q57555 2.94e-44 159 33 11 298 3 MJ0090 Uncharacterized protease MJ0090 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O32034 3.4e-41 151 31 10 317 3 trhP1 tRNA hydroxylation protein P1 Bacillus subtilis (strain 168)
P59916 1.38e-33 130 29 8 304 3 prtC Collagenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
P56113 2.5e-33 130 29 9 319 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain ATCC 700392 / 26695)
P44700 6.38e-33 130 29 13 343 3 trhP tRNA hydroxylation protein P Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9ZMR3 6.39e-33 129 29 9 319 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain J99 / ATCC 700824)
P76403 1.74e-28 117 27 11 344 1 trhP tRNA hydroxylation protein P Escherichia coli (strain K12)
P76104 7.19e-27 114 32 8 293 1 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase Escherichia coli (strain K12)
O32035 5.22e-20 92 23 7 312 3 trhP2 tRNA hydroxylation protein P2 Bacillus subtilis (strain 168)
P33437 4.81e-16 81 26 6 242 1 prtC Collagenase (Fragment) Porphyromonas gingivalis

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_13115
Feature type CDS
Gene rlhA
Product 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family
Location 30735 - 31730 (strand: 1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession ZDB_528
Length 162442 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1416
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K24844 O2-independent ubiquinone biosynthesis protein UbiU - -

Protein Sequence

MELLCPAGNLPALKAAIDNGADAVYIGLKDDTNARHFAGLNFTEKKLAEAVDYVHSHRRHLHIAINTFAHPDGFSRWQRAVDMAAQLGADALILADIAMLEYAAERYPHIERHVSVQASATNTEAIRFYQRNFDVHRIVLPRVLSIHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQETPQGLESRLNDVLIDRYGADENAGYPTLCKGRYCVDSKPYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVTDVAKVWRQAIDRCKADPDNYAPDAAWMQTLGGMSEGRQTTLGAYHRKWQ

Flanking regions ( +/- flanking 50bp)

GCCATTTACAATTTCCGATCATTTTTATTATTCAGTCTGAGAGTCTCACCATGGAACTATTGTGTCCTGCCGGTAATTTACCCGCACTGAAAGCCGCCATTGATAATGGCGCAGATGCGGTTTATATCGGCCTGAAAGATGATACTAATGCCCGTCACTTCGCCGGTCTGAATTTTACTGAAAAGAAACTCGCCGAGGCGGTGGATTATGTTCACAGCCACCGGCGTCACCTGCATATCGCGATTAATACCTTTGCCCATCCGGATGGTTTCAGCCGCTGGCAGCGGGCGGTGGATATGGCCGCACAACTGGGGGCGGATGCCCTGATCCTCGCGGATATCGCCATGCTGGAATATGCTGCGGAGCGTTATCCGCACATTGAGCGTCATGTCTCTGTGCAGGCATCCGCCACCAATACCGAAGCTATCCGTTTCTATCAGCGCAACTTTGATGTGCACCGTATCGTACTGCCCCGTGTACTCTCTATCCATCAGGTAAAACAGCTGGCACGCACCAGCCCGGTGCCGCTGGAAGTCTTTGCTTTCGGCAGCCTGTGCATCATGGCGGAAGGCCGCTGCTACCTCTCCTCCTACCTGACCGGGGAATCCCCGAATACCGTCGGTGCCTGCTCTCCGGCACGGTTTGTCCGCTGGCAGGAGACCCCGCAGGGGCTGGAATCACGCCTGAATGATGTGCTGATTGACCGCTACGGCGCAGATGAGAACGCCGGTTACCCGACACTCTGCAAAGGCCGTTACTGCGTGGACAGCAAGCCTTACCATGCCCTGGAAGAGCCGACCAGCCTTAATACCCTGGAACTGCTGCCGGAACTGATGGCAGCGAATATCGCCTCAGTGAAAATTGAAGGCCGCCAGCGCAGCCCGGCCTATGTGACTGATGTGGCGAAAGTATGGCGTCAGGCGATTGACCGCTGCAAAGCCGATCCGGACAACTATGCGCCGGATGCCGCGTGGATGCAGACTCTCGGCGGCATGTCAGAAGGACGCCAGACCACACTCGGTGCCTATCACCGCAAATGGCAGTAACGGAGAGAAAAACGATGCAATTTTCATTAGGTTCAGTCCTCTATTACTGG