Homologs in group_1000

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05590 FBDBKF_05590 100.0 Morganella morganii S1 ycjX DUF463 domain-containing protein
EHELCC_12000 EHELCC_12000 100.0 Morganella morganii S2 ycjX DUF463 domain-containing protein
LHKJJB_12200 LHKJJB_12200 100.0 Morganella morganii S3 ycjX DUF463 domain-containing protein
HKOGLL_10815 HKOGLL_10815 100.0 Morganella morganii S5 ycjX DUF463 domain-containing protein
F4V73_RS03715 F4V73_RS03715 95.3 Morganella psychrotolerans - YcjX family protein
PMI_RS06625 PMI_RS06625 69.4 Proteus mirabilis HI4320 - YcjX family protein

Distribution of the homologs in the orthogroup group_1000

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76046 0.0 717 73 0 464 1 ycjX Ras-like GTPase YcjX Escherichia coli (strain K12)
P44280 2.03e-174 500 52 3 468 3 HI_1637 Ras-like GTPase HI_1637 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8EG04 2.1e-131 391 44 7 481 1 ycjX Ras-like GTPase YcjX Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_12340
Feature type CDS
Gene ycjX
Product DUF463 domain-containing protein
Location 53239 - 54636 (strand: 1)
Length 1398 (nucleotides) / 465 (amino acids)

Contig

Accession ZDB_527
Length 181446 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1000
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04317 YcjX-like family, DUF463

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3106 Signal transduction mechanisms (T) T Ras-like GTP-binding stress-induced protein YcjX, DUF463 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06918 uncharacterized protein - -

Protein Sequence

MKRLQNELSALVNRGLDRHLRLAVTGLSRSGKTAFITSFVNQLMNVQSGARLPLFSAARDGRILGVKRIPQRDLGVPRFAYDEGLASLYGTPPDWPVPTRGVSEIRLKLRYRTQDSLLRHFKETSTLYLEIVDYPGEWLLDLPMLEQDYLTWSQQMKTLLKGERGEWAEPWLALCRQLDPDAPADEQQLAAIAQAYTDYLHRCKAAGFHFIQPGRFVLPGDMAGAPGLQFFPFITDLMPDPSRLAKAAKSSVLGMLRDRYQYYCDHVVKGFYKHYFQHFDRQIVLVDCLTPLNSGPQAFTDMRLALTQLMQSFHYGKRTLLRRLFSPCIDKLLFAASKADHVTADQHANLVALLQQLTQSAWQQAAFEGIKMDCTGLASVQATEYGMVMHNGEKMPALKGTRLADNTPLTFYPGEVPKRLPDADFWQQQGFQFESFRPLPMRMDTPLPHIRMDSAMEFLLGDKLS

Flanking regions ( +/- flanking 50bp)

TATCCGTGCCGGTATGAAAAAAGTGATTGGCCGTTTTACACCGGAGAATTATGAAACGACTGCAAAATGAGCTGAGTGCCCTCGTCAACCGGGGTCTGGATCGTCATCTTCGTCTTGCCGTTACCGGACTGAGCCGCAGCGGCAAGACCGCGTTTATTACCTCGTTTGTTAATCAGCTGATGAATGTACAGAGCGGTGCGCGTCTGCCGCTGTTTTCGGCTGCCCGTGACGGCCGCATTCTCGGCGTGAAACGCATCCCGCAGCGGGATCTGGGCGTCCCACGCTTTGCCTATGATGAAGGACTTGCCTCACTGTACGGCACACCGCCGGACTGGCCGGTACCGACACGCGGTGTCAGCGAAATCCGCCTGAAACTGCGTTACCGCACTCAGGACAGTCTGCTGCGCCACTTTAAGGAAACCTCCACGCTCTACCTGGAAATCGTCGATTATCCGGGGGAGTGGCTGCTGGATCTGCCGATGCTGGAACAGGATTACCTCACCTGGTCGCAGCAGATGAAAACCCTGCTCAAAGGTGAGCGGGGAGAATGGGCAGAGCCGTGGCTGGCGCTCTGCCGTCAGCTTGACCCGGATGCCCCGGCGGATGAACAGCAGCTGGCAGCGATTGCACAGGCCTATACTGATTATCTTCACCGCTGCAAAGCGGCAGGTTTTCACTTTATCCAGCCCGGTCGTTTTGTGCTGCCGGGGGATATGGCCGGCGCACCCGGATTACAGTTTTTTCCGTTTATTACCGACCTGATGCCGGATCCGTCCCGGCTGGCCAAAGCGGCAAAAAGCAGTGTTCTCGGCATGCTGCGCGATCGCTATCAGTACTATTGTGACCATGTGGTCAAAGGTTTCTATAAGCATTATTTCCAGCATTTCGACCGCCAGATTGTGCTGGTGGATTGCCTGACCCCGCTCAACAGCGGGCCGCAGGCATTTACGGATATGCGTCTGGCGCTGACCCAGCTGATGCAGAGCTTCCATTACGGCAAACGCACATTATTGCGCCGCCTGTTTTCCCCCTGTATCGACAAACTGCTGTTCGCCGCCAGCAAAGCGGATCATGTCACTGCCGACCAGCACGCCAATCTTGTGGCACTGCTTCAGCAGCTGACGCAGTCAGCCTGGCAGCAGGCCGCTTTTGAGGGAATTAAAATGGACTGCACCGGGCTGGCGTCGGTACAGGCCACGGAATACGGCATGGTGATGCACAACGGGGAAAAAATGCCCGCGCTGAAAGGCACCCGGCTGGCAGATAATACCCCGCTGACTTTCTATCCCGGCGAAGTACCGAAACGGCTGCCGGATGCAGACTTCTGGCAGCAGCAGGGGTTTCAGTTTGAATCCTTCAGGCCATTACCGATGCGGATGGATACGCCGCTGCCGCATATCAGGATGGACAGTGCGATGGAATTTTTACTGGGAGATAAACTGTCATGAGCGAGCCTATCAAATCCCGTATTGATTTTGAGGAAGCACCGCTGTCGCCG