Orthogroup:group_1000


Homologs in group_1000

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_05590 FBDBKF_05590 Morganella morganii S1 ycjX DUF463 domain-containing protein
EHELCC_12000 EHELCC_12000 Morganella morganii S2 ycjX DUF463 domain-containing protein
NLDBIP_12340 NLDBIP_12340 Morganella morganii S4 ycjX DUF463 domain-containing protein
LHKJJB_12200 LHKJJB_12200 Morganella morganii S3 ycjX DUF463 domain-containing protein
HKOGLL_10815 HKOGLL_10815 Morganella morganii S5 ycjX DUF463 domain-containing protein
F4V73_RS03715 F4V73_RS03715 Morganella psychrotolerans - YcjX family protein
PMI_RS06625 PMI_RS06625 Proteus mirabilis HI4320 - YcjX family protein

Distribution of group_1000 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1000 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1000

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1000.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ycjX 5
2 - 2

Product

# Product Occurence
1 DUF463 domain-containing protein 5
2 YcjX family protein 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3106 7 T Signal transduction mechanisms (T) Ras-like GTP-binding stress-induced protein YcjX, DUF463 family

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K06918 7 uncharacterized protein - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF04317 7 YcjX-like family, DUF463

Annotations of the 3 SwissProt hits

Annotation Number of occurrences
Ras-like GTPase HI_1637 1
Ras-like GTPase YcjX 2

Protein length

Min length 464
Max length 465
Mean length (sd) 464.9 (0.4)
Median length 465.0

Protein length distribution