Homologs in group_1000

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05590 FBDBKF_05590 69.4 Morganella morganii S1 ycjX DUF463 domain-containing protein
EHELCC_12000 EHELCC_12000 69.4 Morganella morganii S2 ycjX DUF463 domain-containing protein
NLDBIP_12340 NLDBIP_12340 69.4 Morganella morganii S4 ycjX DUF463 domain-containing protein
LHKJJB_12200 LHKJJB_12200 69.4 Morganella morganii S3 ycjX DUF463 domain-containing protein
HKOGLL_10815 HKOGLL_10815 69.4 Morganella morganii S5 ycjX DUF463 domain-containing protein
F4V73_RS03715 F4V73_RS03715 69.6 Morganella psychrotolerans - YcjX family protein

Distribution of the homologs in the orthogroup group_1000

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76046 0.0 686 69 1 465 1 ycjX Ras-like GTPase YcjX Escherichia coli (strain K12)
P44280 6.19e-162 468 50 4 469 3 HI_1637 Ras-like GTPase HI_1637 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8EG04 1.35e-135 402 45 8 481 1 ycjX Ras-like GTPase YcjX Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS06625
Feature type CDS
Gene -
Product YcjX family protein
Location 1451419 - 1452813 (strand: -1)
Length 1395 (nucleotides) / 464 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1000
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04317 YcjX-like family, DUF463

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3106 Signal transduction mechanisms (T) T Ras-like GTP-binding stress-induced protein YcjX, DUF463 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06918 uncharacterized protein - -

Protein Sequence

MKRLQNELTALINRGVDRHLRLAVTGLSRSGKTAFITSLVNQLTNVHSGARLPLFSAARNQQLLGVKRIPQHNLSIPRFTYDEAMESLYHTPPSWPVPTKGVSEIRLQLRYRSHESLTRFIKETSSLYLEIVDYPGEWLLDLPMLEQDYFEWSEQMNRVNQQRTAPVQQWQSLIKKCDPFAPADETLLAEIAAAYTEYLLACKKQGLHFIQPGRFVLPGELSGAPVLQFFPWADLTQYDSAKLKNADKKTNIGMLKKRYEYYGQHIVKGFYRDHFQGFDRQIVLVDCLQPLNQGADVFNDMRQALTQLMRSFHYGKRTLLRRLFSPCIDKLLFAATKADHITPDQHENLVSLLQQLIQDAKQNAIFEGISIDCMGLASIAATESGIVDHHGEKIPAVKGYRLTDNQPLVYFPGEVPKRLPEKAFWQKQGFSFESFRPQQISRDSAVPHIRMDSALEFLLGDKLK

Flanking regions ( +/- flanking 50bp)

GATAAAAATGGGGCTAGATAAGTTATCGCGTCACGTGTCTTGGGAGAAACATGAAACGCTTACAAAATGAACTAACTGCACTGATTAATCGAGGCGTAGATAGGCATTTACGCCTCGCTGTTACAGGGTTAAGCCGCAGTGGTAAAACAGCCTTTATTACCTCTTTAGTCAATCAACTCACCAATGTACATAGTGGGGCGCGTTTACCTTTATTTTCTGCGGCACGCAACCAACAGTTATTAGGGGTTAAACGTATACCGCAACATAACTTAAGTATTCCACGCTTTACTTATGATGAAGCTATGGAGTCACTTTACCATACGCCACCTAGTTGGCCTGTTCCCACTAAGGGTGTCAGTGAAATACGTTTGCAATTACGCTATCGCTCTCATGAGTCTTTAACGCGTTTTATAAAAGAAACTTCATCGCTCTATTTAGAAATTGTTGATTATCCCGGTGAATGGTTACTTGATTTACCTATGCTTGAGCAAGACTATTTTGAATGGTCTGAGCAGATGAATAGAGTTAATCAACAACGAACGGCACCTGTGCAACAGTGGCAGTCGTTAATAAAAAAATGTGATCCCTTTGCCCCTGCTGATGAAACGCTGTTAGCCGAGATCGCCGCAGCTTATACTGAATACTTATTAGCCTGTAAAAAACAGGGATTACATTTTATTCAACCGGGACGCTTTGTTTTACCGGGGGAATTATCCGGCGCGCCTGTTTTACAATTTTTCCCTTGGGCTGACTTAACGCAATACGATAGTGCTAAATTAAAAAATGCCGATAAAAAAACGAATATTGGTATGTTAAAAAAGCGCTATGAATATTATGGTCAACATATTGTAAAAGGATTTTATCGCGACCATTTTCAAGGGTTTGACAGACAAATTGTCTTAGTCGATTGCCTACAACCCCTAAATCAAGGTGCGGATGTTTTTAATGATATGAGACAAGCGCTCACACAATTAATGCGCAGCTTTCATTATGGCAAACGAACCTTATTAAGACGTTTATTCTCCCCCTGTATTGATAAACTGCTATTTGCAGCCACTAAGGCTGACCATATCACGCCAGATCAGCATGAAAATTTAGTCTCTTTGTTACAGCAACTTATTCAAGATGCGAAACAGAATGCTATTTTTGAAGGAATAAGCATTGATTGTATGGGGCTTGCTTCTATTGCTGCCACAGAAAGTGGCATTGTCGATCATCATGGTGAAAAAATCCCAGCCGTAAAAGGCTACCGACTAACGGATAATCAGCCGCTCGTTTATTTTCCAGGAGAAGTTCCTAAGAGATTGCCTGAAAAGGCATTTTGGCAAAAGCAAGGATTTAGTTTTGAATCTTTCCGGCCTCAACAAATATCGAGAGACAGTGCCGTTCCCCATATTCGTATGGATAGTGCCTTGGAGTTTTTATTAGGGGATAAACTAAAATGAATGAGCCATTAAAATCACGTATTGATTTTAAACAATCAACCTTACAAAAC