Homologs in group_1800

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13365 FBDBKF_13365 100.0 Morganella morganii S1 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase
EHELCC_08730 EHELCC_08730 100.0 Morganella morganii S2 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase
LHKJJB_05210 LHKJJB_05210 100.0 Morganella morganii S3 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase
HKOGLL_05705 HKOGLL_05705 100.0 Morganella morganii S5 arnD 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase
F4V73_RS03395 F4V73_RS03395 94.9 Morganella psychrotolerans arnD 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
PMI_RS05085 PMI_RS05085 77.8 Proteus mirabilis HI4320 arnD 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase

Distribution of the homologs in the orthogroup group_1800

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1800

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B4ETL8 0.0 503 78 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Proteus mirabilis (strain HI4320)
Q7N3Q8 0.0 503 77 0 297 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A8GDR8 8.54e-168 470 74 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Serratia proteamaculans (strain 568)
Q7BF86 1.64e-166 467 73 0 296 2 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TIM5 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pestis (strain Pestoides F)
Q1CIH8 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R092 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pestis bv. Antiqua (strain Angola)
Q7CIT9 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pestis
B2K5L2 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1C743 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pestis bv. Antiqua (strain Antiqua)
A7FHH5 1.64e-166 467 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JJ31 1.81e-166 466 73 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A1JPN1 1.46e-163 459 72 0 294 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q6D2F2 2.72e-146 415 67 0 296 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A4WAM2 7.98e-143 407 65 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Enterobacter sp. (strain 638)
Q4KC81 1.2e-142 406 67 1 290 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Q3KCC0 1.44e-141 403 67 1 292 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas fluorescens (strain Pf0-1)
A0KGY5 1.21e-139 399 65 1 298 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
Q4ZSZ1 1.12e-137 393 64 1 293 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas syringae pv. syringae (strain B728a)
Q2NRV8 5.2e-136 389 63 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Sodalis glossinidius (strain morsitans)
B2VBI8 8.03e-136 389 62 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
A6TF97 8.9e-135 386 62 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q48HZ0 9.26e-135 386 64 1 293 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
B5XTL0 1.29e-134 386 63 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Klebsiella pneumoniae (strain 342)
A4SQX0 5.2e-133 382 63 1 298 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Aeromonas salmonicida (strain A449)
Q0TFI6 1.56e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O6:K15:H31 (strain 536 / UPEC)
B7MXT7 1.56e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O81 (strain ED1a)
Q1R9F9 1.8e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain UTI89 / UPEC)
Q8FFM0 1.8e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1ADA8 1.8e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O1:K1 / APEC
B7MG23 1.8e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UFR8 1.8e-132 380 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q31YK1 3.74e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella boydii serotype 4 (strain Sb227)
B2TW39 3.74e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q3YZV0 4.5e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella sonnei (strain Ss046)
Q0T2M7 4.5e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella flexneri serotype 5b (strain 8401)
P76472 4.5e-132 379 62 2 295 1 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain K12)
B1IXT1 4.5e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A2C3 4.5e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O9:H4 (strain HS)
B1X8W9 4.5e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain K12 / DH10B)
B7LM75 4.96e-132 379 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
Q57M55 6.94e-132 379 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella choleraesuis (strain SC-B67)
C0Q068 7.33e-132 379 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella paratyphi C (strain RKS4594)
B6I7J9 7.7e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain SE11)
B7M5T8 7.7e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O8 (strain IAI1)
B7LAS1 7.7e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain 55989 / EAEC)
B5YXP9 8.78e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XDZ2 8.78e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O157:H7
B7N5M1 9.37e-132 379 62 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
O52326 2.19e-131 377 61 1 295 1 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B4SYX2 2.29e-131 377 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella newport (strain SL254)
B5R273 2.29e-131 377 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella enteritidis PT4 (strain P125109)
B5FNU0 2.29e-131 377 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella dublin (strain CT_02021853)
A7ZP74 2.89e-131 377 61 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O139:H28 (strain E24377A / ETEC)
Q83KB7 3.72e-131 377 61 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella flexneri
B4TPI3 4.31e-131 377 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella schwarzengrund (strain CVM19633)
B5EZH9 6.26e-131 376 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella agona (strain SL483)
A9N5B1 8.13e-131 376 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8Z539 9.48e-131 376 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella typhi
B5BCP5 9.48e-131 376 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella paratyphi A (strain AKU_12601)
Q5PNA7 9.48e-131 376 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q32DT2 9.74e-131 376 61 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shigella dysenteriae serotype 1 (strain Sd197)
B4TBG7 3.84e-130 374 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella heidelberg (strain SL476)
B5RCC5 3.93e-130 374 61 1 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Salmonella gallinarum (strain 287/91 / NCTC 13346)
B7NNT5 5.73e-130 374 61 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B1LLL0 2.15e-129 372 61 2 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Escherichia coli (strain SMS-3-5 / SECEC)
A6V1N9 4.71e-127 367 62 2 297 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas aeruginosa (strain PA7)
Q02R26 5.14e-127 366 62 2 297 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HY62 1.83e-126 365 62 2 297 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
B7VBN1 1.83e-126 365 62 2 297 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Pseudomonas aeruginosa (strain LESB58)
A8FRR1 6.37e-107 316 54 3 295 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Shewanella sediminis (strain HAW-EB3)
Q8D340 5.76e-92 277 45 2 283 3 arnD Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD Wigglesworthia glossinidia brevipalpis

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_09055
Feature type CDS
Gene arnD
Product 4-deoxy-4-formamido-L-arabinose-phosphoundecapren ol deformylase
Location 224154 - 225047 (strand: 1)
Length 894 (nucleotides) / 297 (amino acids)

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1800
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01522 Polysaccharide deacetylase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0726 Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 GM Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family

Kegg Ortholog Annotation(s)

Protein Sequence

MKNVGLRVDVDTYRGTLEGVPQLLKVFAQHDIKASFFFSVGPDNMGRHLWRLLRPKFLWKMLRSNAASLYGLDILLAGTAWPGKKIARDLGYLMKQTLDAGHEVGLHAWDHQGWQAKIGRWTPAQITEQIRLGTDALSQATGQPVQCSAVAGWRADERVIEAKQAFGFAYNSDCRGTHPFRPLLADGTTGTVQIPVTLPTYDEVVGPQVADADFNDFILDAIRRDQGVPVYTIHTEVEGMSKAAQFEALLDRIKNEDFRFCPLSELLPSDLSTLPTGKVVRGDFPGREGWLGCQQEG

Flanking regions ( +/- flanking 50bp)

CTCGACTTCTTCCTGCGCGGTGCGGTTGAAGAGCTGAGGAACGACGAGTAATGAAAAATGTCGGCCTGCGGGTTGACGTGGATACTTACCGCGGCACACTGGAAGGTGTGCCGCAGTTACTGAAGGTATTTGCGCAGCACGATATTAAAGCCAGTTTTTTCTTCAGCGTCGGGCCGGACAATATGGGGCGTCACTTGTGGCGCCTTTTGCGTCCTAAGTTTCTGTGGAAAATGCTGCGCTCCAATGCGGCTTCATTATACGGCCTGGATATTCTGCTGGCCGGTACAGCGTGGCCGGGTAAGAAAATAGCCCGTGACCTGGGTTACCTGATGAAACAGACGCTGGATGCCGGTCATGAAGTCGGCCTGCATGCGTGGGATCACCAGGGCTGGCAGGCAAAAATCGGCCGCTGGACACCGGCACAAATCACAGAGCAGATTCGTCTGGGTACCGATGCCTTATCACAGGCTACCGGGCAGCCGGTGCAGTGCTCTGCGGTGGCGGGCTGGCGCGCGGATGAACGGGTGATTGAAGCCAAACAGGCATTTGGTTTTGCCTACAACAGTGATTGCCGCGGAACGCATCCGTTTCGTCCGCTTCTTGCAGACGGGACTACCGGAACCGTGCAGATTCCTGTTACACTGCCGACCTATGATGAAGTGGTGGGGCCGCAGGTGGCTGATGCGGATTTTAACGACTTTATCCTCGATGCAATCAGACGGGATCAGGGCGTACCGGTTTATACTATCCACACAGAAGTGGAAGGTATGTCCAAAGCCGCACAGTTTGAGGCATTGCTGGATCGGATTAAAAACGAGGATTTCCGCTTTTGTCCGCTCAGCGAACTGCTGCCGTCTGATTTATCAACATTACCGACAGGCAAAGTGGTACGGGGTGATTTCCCCGGCCGGGAAGGGTGGCTGGGCTGCCAACAAGAGGGATAGCATTACATGCTGAATAACCGGGCGAGTAAAATCGGAGCCTTTCTGCTGGC