Homologs in group_249

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03225 FBDBKF_03225 100.0 Morganella morganii S1 kdsD arabinose-5-phosphate isomerase KdsD
EHELCC_07310 EHELCC_07310 100.0 Morganella morganii S2 kdsD arabinose-5-phosphate isomerase KdsD
LHKJJB_07170 LHKJJB_07170 100.0 Morganella morganii S3 kdsD arabinose-5-phosphate isomerase KdsD
HKOGLL_03760 HKOGLL_03760 100.0 Morganella morganii S5 kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS11695 F4V73_RS11695 93.8 Morganella psychrotolerans kdsD arabinose-5-phosphate isomerase KdsD
F4V73_RS12535 F4V73_RS12535 27.5 Morganella psychrotolerans - CBS domain-containing protein
PMI_RS18175 PMI_RS18175 82.3 Proteus mirabilis HI4320 kdsD arabinose-5-phosphate isomerase KdsD

Distribution of the homologs in the orthogroup group_249

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_249

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8X9J0 0.0 514 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli O157:H7
Q8D1Q8 0.0 514 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Yersinia pestis
P45395 0.0 514 77 0 318 1 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli (strain K12)
Q8FD73 0.0 513 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q83JF4 0.0 512 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Shigella flexneri
Q8ZLS1 0.0 511 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z3G6 0.0 511 77 0 318 3 kdsD Arabinose 5-phosphate isomerase KdsD Salmonella typhi
Q9HVW0 4.73e-126 366 57 1 319 1 kdsD Arabinose 5-phosphate isomerase KdsD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q5NGP7 3.99e-112 331 53 3 311 1 kdsD Arabinose 5-phosphate isomerase KdsD Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Q8Z4C7 1.03e-101 304 48 2 314 3 gutQ Arabinose 5-phosphate isomerase GutQ Salmonella typhi
Q8ZMJ9 3.08e-100 300 47 2 314 3 gutQ Arabinose 5-phosphate isomerase GutQ Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
O67500 3.19e-100 300 46 2 320 3 aq_1546 Uncharacterized phosphosugar isomerase aq_1546 Aquifex aeolicus (strain VF5)
Q83MK2 6.61e-100 300 48 2 315 3 gutQ Arabinose 5-phosphate isomerase GutQ Shigella flexneri
Q8FEN7 1.8e-99 298 47 2 314 3 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P17115 1.29e-98 296 47 2 314 1 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli (strain K12)
Q8X4S5 1.29e-98 296 47 2 314 3 gutQ Arabinose 5-phosphate isomerase GutQ Escherichia coli O157:H7
Q47334 7.37e-78 243 42 3 307 3 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli
Q8FDQ2 5.12e-77 241 42 3 307 1 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45313 1.47e-73 233 41 3 305 3 HI_1678 Probable arabinose 5-phosphate isomerase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42502 3.02e-73 231 45 1 268 3 kpsF Arabinose 5-phosphate isomerase KpsF Escherichia coli
Q9ZD42 1.59e-69 222 38 3 295 3 RP505 Uncharacterized protein RP505 Rickettsia prowazekii (strain Madrid E)
Q9ZJI5 1.08e-62 204 39 6 324 3 jhp_1324 Uncharacterized protein jhp_1324 Helicobacter pylori (strain J99 / ATCC 700824)
O25971 8.29e-61 200 39 4 297 3 HP_1429 Uncharacterized protein HP_1429 Helicobacter pylori (strain ATCC 700392 / 26695)
Q9PJZ7 7.66e-46 161 34 4 285 3 TC_0679 Uncharacterized protein TC_0679 Chlamydia muridarum (strain MoPn / Nigg)
Q9M1T1 3.49e-44 157 31 4 295 2 SETH3 Probable arabinose 5-phosphate isomerase Arabidopsis thaliana
O84404 1.18e-43 155 33 4 285 3 CT_399 Uncharacterized protein CT_399 Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9Z826 9.17e-39 142 31 2 291 3 CPn_0526 Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 Chlamydia pneumoniae
O28478 1.11e-08 57 25 6 188 1 AF_1796 Uncharacterized protein AF_1796 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9YAK0 2.9e-07 53 31 3 115 3 APE_1940.1 Uncharacterized protein APE_1940.1 Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q81J01 0.000148 47 26 5 159 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Bacillus cereus (strain ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NCTC 2599 / NRRL B-3711)
Q6HPL2 0.000149 47 26 5 159 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Bacillus thuringiensis subsp. konkukian (strain 97-27)
Q65P46 0.000303 46 25 3 136 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
Q9WYG1 0.000613 44 23 3 147 4 TM_0326 Uncharacterized HTH-type transcriptional regulator TM_0326 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_07635
Feature type CDS
Gene kdsD
Product arabinose-5-phosphate isomerase KdsD
Location 198794 - 199762 (strand: -1)
Length 969 (nucleotides) / 322 (amino acids)

Contig

Accession ZDB_522
Length 269640 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_249
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00571 CBS domain
PF01380 SIS domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0794 Carbohydrate transport and metabolism (G)
Cell wall/membrane/envelope biogenesis (M)		 GM D-arabinose 5-phosphate isomerase GutQ

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars		 CMP-KDO biosynthesis

Protein Sequence

MSRTDFQLTGKRVLRIEREGLASLEQYINDDFDKACELIFRCEGKVIIMGMGKSGHIGHKMAATFASTGTSSFFVHPGEAAHGDLGMVTKKDVVIAISNSGESSEIQALIPVIKRQNIPLICMTGNPDSTMGKAADIHLCIKVPQEACPLGLAPTTSTTATLVMGDALAIALLQARGFTAEDFALSHPGGALGRKLLLLVSDLMNTGDDIPRVPKTASLREALVEITRKKLGMTVICDDDMIIQGIFTDGDLRRIFDAGTDLNNCQIADVMTPGGIRIKANTLAVEALNLMQSRHITSLLVTEGDKLLGVLHMHDLLQAGVV

Flanking regions ( +/- flanking 50bp)

AAGCGTCAGCCATTAATACACAGACAGATACTGAAAGTGAGAAAAAACTGATGTCCCGAACTGATTTTCAACTAACAGGTAAACGTGTCCTCCGGATTGAACGTGAAGGTCTCGCGTCACTCGAACAGTATATTAATGATGATTTCGATAAAGCCTGTGAACTGATATTCCGCTGTGAAGGCAAAGTGATCATCATGGGGATGGGAAAATCCGGTCATATCGGCCACAAAATGGCCGCGACATTTGCCAGCACCGGCACCTCCTCCTTCTTTGTGCATCCGGGTGAAGCCGCACACGGCGACCTGGGGATGGTCACAAAGAAAGATGTGGTTATCGCGATTTCAAACTCCGGTGAATCCTCAGAAATTCAGGCGCTGATCCCGGTTATCAAACGTCAGAACATCCCGCTAATCTGCATGACCGGCAACCCGGACAGTACCATGGGAAAAGCGGCGGATATCCATCTGTGTATTAAAGTCCCGCAGGAAGCCTGCCCGCTCGGCCTTGCGCCGACCACCAGCACCACCGCCACGCTGGTGATGGGTGACGCGCTGGCGATTGCCTTATTACAGGCGCGCGGCTTTACCGCTGAAGATTTTGCCCTCTCACATCCGGGCGGCGCGCTCGGCCGCAAACTGCTGTTACTGGTTTCCGACCTGATGAACACCGGGGATGATATCCCGCGTGTGCCGAAAACCGCCTCACTGCGCGAAGCACTGGTGGAAATCACCCGTAAAAAACTGGGTATGACGGTTATCTGTGATGATGACATGATCATTCAGGGTATTTTCACTGACGGTGACCTGCGCCGGATTTTCGACGCTGGCACAGACCTCAATAACTGCCAGATTGCCGATGTAATGACTCCGGGCGGGATCCGCATCAAAGCCAATACCCTGGCGGTTGAGGCACTGAATTTAATGCAGTCCCGTCATATCACCTCTTTATTAGTCACAGAAGGTGATAAACTGCTCGGCGTACTGCATATGCATGATCTGCTCCAGGCCGGAGTGGTGTAAGGACTGACGATGACACAAATTACCACTATTGACACCTGCTATGGCCCGAT