K06041


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K06041, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K06041
KO K06041
Description arabinose-5-phosphate isomerase [EC:5.3.1.13]

KO part of 3 pathways

Lipopolysaccharide biosynthesis
Metabolic pathways
Biosynthesis of nucleotide sugars

KO part of 1 modules

M00063 Lipopolysaccharide metabolism CMP-KDO biosynthesis

Occurence in the database

K06041 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_249 PMI_RS18175 3989248 3990234 -1 kdsD arabinose-5-phosphate isomerase KdsD Proteus mirabilis HI4320
1 group_249 FBDBKF_03225 47214 48182 1 kdsD arabinose-5-phosphate isomerase KdsD Morganella morganii S1
2 group_249 EHELCC_07310 198921 199889 -1 kdsD arabinose-5-phosphate isomerase KdsD Morganella morganii S2
3 group_249 NLDBIP_07635 198794 199762 -1 kdsD arabinose-5-phosphate isomerase KdsD Morganella morganii S4
4 group_249 LHKJJB_07170 162540 163508 -1 kdsD arabinose-5-phosphate isomerase KdsD Morganella morganii S3
5 group_249 HKOGLL_03760 69879 70847 1 kdsD arabinose-5-phosphate isomerase KdsD Morganella morganii S5
6 group_249 F4V73_RS11695 488464 489432 -1 kdsD arabinose-5-phosphate isomerase KdsD Morganella psychrotolerans