Homologs in group_47

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13 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06950 FBDBKF_06950 100.0 Morganella morganii S1 dacC D-alanyl-D-alanine carboxypeptidase
FBDBKF_10095 FBDBKF_10095 59.5 Morganella morganii S1 dacA D-alanyl-D-alanine carboxypeptidase DacA
EHELCC_04020 EHELCC_04020 100.0 Morganella morganii S2 dacC D-alanyl-D-alanine carboxypeptidase
EHELCC_04895 EHELCC_04895 59.5 Morganella morganii S2 dacA D-alanyl-D-alanine carboxypeptidase DacA
NLDBIP_04895 NLDBIP_04895 59.5 Morganella morganii S4 dacA D-alanyl-D-alanine carboxypeptidase DacA
LHKJJB_09850 LHKJJB_09850 100.0 Morganella morganii S3 dacC D-alanyl-D-alanine carboxypeptidase
LHKJJB_13735 LHKJJB_13735 59.5 Morganella morganii S3 dacA D-alanyl-D-alanine carboxypeptidase DacA
HKOGLL_09125 HKOGLL_09125 100.0 Morganella morganii S5 dacC D-alanyl-D-alanine carboxypeptidase
HKOGLL_12800 HKOGLL_12800 59.5 Morganella morganii S5 dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS00240 F4V73_RS00240 61.3 Morganella psychrotolerans dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS01135 F4V73_RS01135 92.0 Morganella psychrotolerans - serine hydrolase
PMI_RS02085 PMI_RS02085 58.3 Proteus mirabilis HI4320 dacA D-alanyl-D-alanine carboxypeptidase DacA
PMI_RS03290 PMI_RS03290 70.5 Proteus mirabilis HI4320 - serine hydrolase

Distribution of the homologs in the orthogroup group_47

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_47

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08506 0.0 546 67 2 399 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Escherichia coli (strain K12)
P0AEB2 6.75e-173 491 58 3 407 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli (strain K12)
P0AEB3 6.75e-173 491 58 3 407 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEB4 6.75e-173 491 58 3 407 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O157:H7
P44466 4.12e-128 377 51 2 362 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37604 1.45e-127 375 49 0 355 3 dacD D-alanyl-D-alanine carboxypeptidase DacD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33013 8.11e-125 369 49 2 370 1 dacD D-alanyl-D-alanine carboxypeptidase DacD Escherichia coli (strain K12)
P38422 2.03e-57 195 34 5 351 2 dacF D-alanyl-D-alanine carboxypeptidase DacF Bacillus subtilis (strain 168)
Q05523 2.37e-36 141 30 14 422 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Geobacillus stearothermophilus
P08750 5.73e-36 139 32 14 425 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Bacillus subtilis (strain 168)
P35150 5.49e-34 133 30 12 351 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Bacillus subtilis (strain 168)
P39042 5.89e-18 87 30 8 283 1 None D-alanyl-D-alanine carboxypeptidase Streptomyces sp. (strain K15)
P72161 6.27e-14 75 27 8 259 3 pbpG D-alanyl-D-alanine endopeptidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P0AFI6 7.84e-14 75 27 8 256 3 pbpG D-alanyl-D-alanine endopeptidase Shigella flexneri
P0AFI5 7.84e-14 75 27 8 256 1 pbpG D-alanyl-D-alanine endopeptidase Escherichia coli (strain K12)
I6Y204 9.83e-12 68 25 8 261 1 dacB2 D-alanyl-D-alanine carboxypeptidase DacB2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O53380 4.36e-10 64 26 9 282 1 dacB1 D-alanyl-D-alanine carboxypeptidase DacB1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P44664 8.16e-06 50 25 7 219 3 pbpG D-alanyl-D-alanine endopeptidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04020
Feature type CDS
Gene dacC
Product D-alanyl-D-alanine carboxypeptidase
Location 131029 - 132231 (strand: -1)
Length 1203 (nucleotides) / 400 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_47
Orthogroup size 14
N. genomes 7

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Genomic region

Domains

PF00768 D-alanyl-D-alanine carboxypeptidase
PF07943 Penicillin-binding protein 5, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1686 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07258 serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MQTVISSRVTGLIGGLAFGFLSIGHAFAEETPVAPQVDAKAYVLMDYNSGKILASANADERLDPASLTKIMSSYVVGQAIKAGKVTPDDIVTVGINAWATGNPVLKGSSLMFLKPDDRVKLIDLNKGMVIQSGNDASIALAEYVAGSQETFVSQMNSYAKQIGLTNTHFKTVHGLDSEGQYSTAKDMALLTQALITDVPDEYVIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFAESEKILSWGFRFFETVAPVKADTPLTTERVWFGDISEVPLGAEKDIYVTIPKGKLKDLKATFELDSTTLEAPLAKNQVVGKINFILDDKVVEQRPLVVQQQVEEAGFFGRIWDYIVRFFAGLWHSVFG

Flanking regions ( +/- flanking 50bp)

TATCACTCTTATTTTTGTCACGATGTACCGGGTTTAAAGAGGGAAGAGTAATGCAGACAGTAATCAGTTCACGGGTAACCGGTTTAATCGGCGGGCTTGCTTTCGGATTCTTAAGCATCGGCCACGCGTTTGCGGAGGAAACACCGGTTGCACCGCAGGTGGATGCAAAAGCGTATGTGCTGATGGACTACAACAGCGGGAAAATCCTGGCATCCGCGAATGCGGATGAGCGCCTTGACCCGGCGTCACTGACAAAAATCATGAGCAGTTATGTGGTCGGACAGGCGATTAAAGCCGGGAAAGTGACACCGGATGATATCGTCACCGTCGGTATTAATGCCTGGGCAACCGGTAACCCAGTGCTGAAAGGCTCTTCCCTGATGTTCCTCAAGCCCGATGACCGCGTAAAATTAATCGATCTGAACAAAGGGATGGTTATTCAGTCCGGCAATGACGCCAGTATTGCGCTGGCGGAATATGTCGCGGGCAGCCAGGAAACCTTTGTTTCGCAGATGAACAGTTATGCCAAACAGATTGGCCTGACAAATACCCATTTTAAAACGGTTCACGGGCTTGATTCCGAAGGGCAGTACAGTACTGCCAAAGATATGGCGCTGCTGACCCAGGCGCTGATCACCGATGTGCCGGATGAATATGTTATCCATAAAGAGAAAGAATTTACTTTTAATAAGATCCGTCAGCCGAACCGTAACCGCCTGCTGTGGAGCACTAATCTCAATGTGGATGGTGTGAAAACCGGTCACACCAGCGGTGCGGGACATAACCTGGTGGCTTCCGCGACCGACGGCCCGATGCGTCTGATTTCTGTGGTGCTGGGTGCACCGAGTGACCGTGTCCGCTTTGCTGAAAGCGAAAAAATCCTCTCCTGGGGCTTCCGTTTCTTTGAAACCGTGGCACCGGTGAAAGCCGATACCCCGCTGACCACTGAGCGCGTCTGGTTCGGGGATATTTCAGAAGTGCCGCTGGGCGCGGAAAAAGACATTTATGTCACTATCCCGAAAGGCAAACTCAAAGATCTGAAAGCGACCTTTGAGCTGGACAGCACCACGCTGGAAGCGCCGCTGGCGAAAAACCAGGTGGTCGGGAAAATCAACTTTATCCTTGATGATAAAGTCGTTGAACAGCGTCCGCTGGTAGTTCAGCAGCAGGTTGAGGAAGCCGGTTTCTTCGGCCGTATCTGGGATTATATTGTCCGCTTCTTTGCCGGACTGTGGCATTCCGTCTTCGGTTAAGCGGGCTGTATTTATAAGGTTATTCCCCTTTCAGGCGGCAATTTATCATG