Homologs in group_471

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10095 FBDBKF_10095 72.9 Morganella morganii S1 dacA D-alanyl-D-alanine carboxypeptidase DacA
EHELCC_04895 EHELCC_04895 72.9 Morganella morganii S2 dacA D-alanyl-D-alanine carboxypeptidase DacA
NLDBIP_04895 NLDBIP_04895 72.9 Morganella morganii S4 dacA D-alanyl-D-alanine carboxypeptidase DacA
LHKJJB_13735 LHKJJB_13735 72.9 Morganella morganii S3 dacA D-alanyl-D-alanine carboxypeptidase DacA
HKOGLL_12800 HKOGLL_12800 72.9 Morganella morganii S5 dacA D-alanyl-D-alanine carboxypeptidase DacA
F4V73_RS00240 F4V73_RS00240 72.6 Morganella psychrotolerans dacA D-alanyl-D-alanine carboxypeptidase DacA

Distribution of the homologs in the orthogroup group_471

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_471

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEB2 0.0 635 77 1 392 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli (strain K12)
P0AEB3 0.0 635 77 1 392 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEB4 0.0 635 77 1 392 3 dacA D-alanyl-D-alanine carboxypeptidase DacA Escherichia coli O157:H7
P08506 1.14e-175 498 59 1 400 1 dacC D-alanyl-D-alanine carboxypeptidase DacC Escherichia coli (strain K12)
P37604 3.38e-143 416 51 1 387 3 dacD D-alanyl-D-alanine carboxypeptidase DacD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44466 3.15e-138 403 53 5 390 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P33013 1.25e-134 394 51 0 356 1 dacD D-alanyl-D-alanine carboxypeptidase DacD Escherichia coli (strain K12)
P38422 5.61e-61 205 33 8 404 2 dacF D-alanyl-D-alanine carboxypeptidase DacF Bacillus subtilis (strain 168)
Q05523 3.66e-38 146 31 14 398 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Geobacillus stearothermophilus
P35150 4.77e-29 119 35 7 260 1 dacB D-alanyl-D-alanine carboxypeptidase DacB Bacillus subtilis (strain 168)
P08750 2.28e-26 113 29 9 395 1 dacA D-alanyl-D-alanine carboxypeptidase DacA Bacillus subtilis (strain 168)
P39042 1.98e-22 99 31 8 264 1 None D-alanyl-D-alanine carboxypeptidase Streptomyces sp. (strain K15)
I6Y204 1.92e-19 91 30 7 259 1 dacB2 D-alanyl-D-alanine carboxypeptidase DacB2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P72161 3.75e-14 76 25 6 285 3 pbpG D-alanyl-D-alanine endopeptidase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O53380 3.71e-13 73 26 7 276 1 dacB1 D-alanyl-D-alanine carboxypeptidase DacB1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P0AFI6 5.83e-13 72 26 6 253 3 pbpG D-alanyl-D-alanine endopeptidase Shigella flexneri
P0AFI5 5.83e-13 72 26 6 253 1 pbpG D-alanyl-D-alanine endopeptidase Escherichia coli (strain K12)
P44664 2.33e-06 52 25 6 224 3 pbpG D-alanyl-D-alanine endopeptidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02085
Feature type CDS
Gene dacA
Product D-alanyl-D-alanine carboxypeptidase DacA
Location 489929 - 491140 (strand: -1)
Length 1212 (nucleotides) / 403 (amino acids)
In genomic island -

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_471
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00768 D-alanyl-D-alanine carboxypeptidase
PF07943 Penicillin-binding protein 5, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1686 Cell wall/membrane/envelope biogenesis (M) M D-alanyl-D-alanine carboxypeptidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07258 serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways		 -

Protein Sequence

MKQTRPVKLLRTRLFSATFILLAISHHAIADDTLKTMIPAVPNIEAESYILIDYNSGKVLAEKNADVRRDPASLTKMMTSYVIGQAIRAGKISNNDIVPIGEEAWATGNPVFRGSSLMFLKPGDKVTVSQLTRGINLQSGNDACVAMASYVAGSQDTFVTMMNDYVKRLGLQNTQFQTVHGLDAPGQYSSARDMALIGAALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATEGNMRLISAVMGGHSSKGRDAESKKLLTWGFRFFETVKPLQVGKEFAAEPIWYGDTDKVQLGVDKDVYLTIPRGRLKDLKASYVLDNVELHAPVSKNQVVGTINFQLDGQVIEQRPLVVMNEVKEGGIFSRLIDYIKLLFSRWFG

Flanking regions ( +/- flanking 50bp)

CTTATCAACTTTTATTTATTTTCCCTGAATTTCCGGAACAGACAAACAGAATGAAACAGACACGCCCAGTGAAATTACTAAGAACACGTCTATTTAGTGCAACCTTTATATTATTAGCTATTAGCCATCATGCTATTGCTGATGACACATTAAAAACAATGATACCCGCTGTTCCTAATATCGAAGCCGAATCCTATATTCTTATCGACTATAATTCTGGGAAAGTCCTCGCGGAAAAAAACGCAGATGTCCGTCGTGATCCAGCCAGTTTAACCAAAATGATGACCAGTTATGTTATAGGTCAAGCCATTCGTGCAGGAAAAATATCGAACAACGATATTGTTCCTATTGGTGAAGAAGCATGGGCAACGGGCAACCCTGTATTTCGCGGCTCATCATTAATGTTTTTAAAACCCGGTGATAAAGTCACCGTTTCACAATTAACACGCGGTATCAATCTACAATCAGGTAATGATGCCTGTGTAGCAATGGCCTCTTATGTTGCGGGAAGCCAAGATACCTTTGTCACTATGATGAATGACTATGTTAAGCGTCTAGGTTTACAAAACACACAATTTCAAACTGTACATGGTTTAGATGCACCTGGGCAATACAGTAGTGCACGAGATATGGCATTGATTGGCGCCGCATTAATTCGTGATGTTCCAGAAGAATATGCCATTTATAAAGAAAAAGAGTTTACCTACAATAATATCCGTCAAACTAACCGTAATGGTTTACTTTGGGATACTAGCCTCAATGTTGATGGTATTAAAACAGGTCATACTGAAGCTGCGGGTTATAATCTTGTTGCCTCTGCAACAGAAGGAAATATGCGCTTGATTTCTGCTGTGATGGGGGGACACTCATCTAAAGGCCGTGATGCTGAAAGTAAAAAACTACTTACTTGGGGTTTTCGCTTCTTTGAAACGGTAAAACCGCTGCAAGTGGGTAAAGAATTTGCCGCTGAACCTATCTGGTATGGTGATACTGATAAAGTGCAATTAGGGGTTGATAAAGATGTTTATCTCACGATCCCCCGTGGCCGACTCAAAGATCTAAAGGCCAGTTATGTATTAGATAATGTTGAATTACATGCGCCAGTCAGTAAAAACCAAGTGGTTGGCACCATTAATTTCCAACTTGATGGGCAAGTCATTGAACAACGTCCACTTGTTGTTATGAATGAAGTGAAAGAAGGTGGCATTTTCAGCCGCTTGATTGATTACATCAAATTATTATTTTCACGTTGGTTTGGTTAAGGCTTGAAAAGGATAAATGTGTCCATATATAAAGATTATATCGATATTGG