Homologs in group_239

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01810 FBDBKF_01810 100.0 Morganella morganii S1 appC Cytochrome bd-type quinol oxidase, subunit 1
EHELCC_02280 EHELCC_02280 100.0 Morganella morganii S2 appC Cytochrome bd-type quinol oxidase, subunit 1
LHKJJB_00855 LHKJJB_00855 100.0 Morganella morganii S3 appC Cytochrome bd-type quinol oxidase, subunit 1
HKOGLL_00895 HKOGLL_00895 100.0 Morganella morganii S5 appC Cytochrome bd-type quinol oxidase, subunit 1
F4V73_RS04135 F4V73_RS04135 92.4 Morganella psychrotolerans - cytochrome ubiquinol oxidase subunit I
PMI_RS06940 PMI_RS06940 82.4 Proteus mirabilis HI4320 - cytochrome ubiquinol oxidase subunit I
PMI_RS11760 PMI_RS11760 73.3 Proteus mirabilis HI4320 - cytochrome ubiquinol oxidase subunit I

Distribution of the homologs in the orthogroup group_239

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_239

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P94364 5.94e-85 271 35 5 457 3 cydA Cytochrome bd ubiquinol oxidase subunit 1 Bacillus subtilis (strain 168)
P26459 9.32e-69 230 37 5 317 1 appC Cytochrome bd-II ubiquinol oxidase subunit 1 Escherichia coli (strain K12)
P26459 1.38e-11 70 40 1 114 1 appC Cytochrome bd-II ubiquinol oxidase subunit 1 Escherichia coli (strain K12)
P0ABK1 2.3e-68 229 30 10 503 3 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Shigella flexneri
P0ABJ9 2.3e-68 229 30 10 503 1 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Escherichia coli (strain K12)
P0ABK0 2.3e-68 229 30 10 503 3 cydA Cytochrome bd-I ubiquinol oxidase subunit 1 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P45021 4.28e-68 228 31 10 487 3 HI_1076 Probable cytochrome oxidase subunit 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q09049 2.21e-66 224 29 7 501 3 cydA Cytochrome bd ubiquinol oxidase subunit 1 Azotobacter vinelandii
C0SP90 2.51e-53 187 29 8 435 1 ythA Putative cytochrome bd menaquinol oxidase subunit I Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01180
Feature type CDS
Gene appC
Product Cytochrome bd-type quinol oxidase, subunit 1
Location 241713 - 243053 (strand: 1)
Length 1341 (nucleotides) / 446 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_239
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF01654 Cytochrome bd terminal oxidase subunit I

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1271 Energy production and conversion (C) C Cytochrome bd-type quinol oxidase, subunit 1

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K00425 cytochrome bd ubiquinol oxidase subunit I [EC:7.1.1.7] Oxidative phosphorylation
Two-component system		 Cytochrome bd ubiquinol oxidase

Protein Sequence

MFGLSALELARIQFAFTVSFHIIFPAITIGLASFLAVLEGMWLKTRNEDYKKLFHFWSAIFAVNFGMGVVSGLVMAYQFGTNWSFFSEFAGSITGPLLTYEVLTAFFLEAGFLGVMLFGWNRVGEKLHYFATCMVALGTLMSTFWILASNSWMQTPQGHEVINGVVVPVDWFAVIFNPSFPYRLLHMTTAAFLASAFFIAASAAWHLLRSNKSGAMKKMFSMSLWLIVVLAPLQALIGDAHGLNTLKHQPVKVAAMEGHWENKPGEATPLILFGIPDNAQEKTRYAVEIPGLASLILTHSLDKQVPALTEFPPEDRPDNVFAVFWSFRVMVGLGMLMLLAAALSLWLRYRGRLYDSRPFQRFMLWMAPSGLIAILAGWFVTEIGRQPWVVYGLQRTTDAVSAHGEMHMSISLLIFFIVYGSVFGIGYIYMMKLIRKGIAPEVSHGH

Flanking regions ( +/- flanking 50bp)

TTTCATCTGCGTAATTATCATTTACATAGCTATAACAACGAGAGGTCACAATGTTTGGGTTAAGTGCCCTTGAGCTTGCGCGAATTCAGTTCGCCTTCACTGTGTCGTTTCATATCATTTTCCCTGCAATCACCATCGGCCTGGCGTCATTCCTGGCGGTGCTTGAGGGGATGTGGCTGAAAACCCGCAATGAGGATTACAAAAAGCTCTTTCATTTCTGGTCAGCCATCTTTGCCGTGAACTTCGGTATGGGTGTGGTTTCCGGTCTGGTGATGGCCTATCAGTTCGGTACCAACTGGAGTTTCTTTTCTGAGTTTGCGGGATCAATCACCGGTCCGCTGCTCACTTATGAAGTACTGACTGCGTTCTTCCTGGAAGCCGGTTTCCTCGGCGTGATGCTGTTCGGCTGGAACCGTGTCGGTGAAAAACTGCACTATTTCGCCACCTGCATGGTTGCGCTCGGCACACTGATGTCCACCTTCTGGATCCTGGCTTCCAACAGCTGGATGCAGACCCCTCAGGGGCATGAGGTGATCAACGGTGTTGTGGTACCGGTGGACTGGTTCGCGGTGATTTTCAACCCGTCCTTCCCGTACCGCCTGCTGCACATGACAACCGCCGCATTTCTGGCATCCGCCTTCTTTATCGCTGCTTCTGCCGCCTGGCACCTGTTGCGCAGCAACAAATCCGGTGCCATGAAAAAGATGTTTTCCATGTCATTGTGGCTGATTGTGGTTCTCGCACCGCTCCAGGCACTGATTGGTGATGCGCACGGGCTGAACACACTGAAACATCAGCCGGTTAAGGTAGCGGCAATGGAAGGTCACTGGGAGAACAAACCCGGGGAGGCCACACCGCTGATCCTGTTTGGTATTCCGGATAATGCACAGGAAAAAACCCGCTATGCCGTGGAAATTCCCGGGCTGGCCAGTCTGATCCTGACACACAGCCTTGATAAACAGGTGCCCGCACTGACCGAGTTCCCGCCGGAAGACAGACCGGACAACGTGTTCGCCGTGTTCTGGTCATTCCGTGTGATGGTCGGCCTCGGCATGCTGATGCTGCTGGCTGCCGCACTGAGCCTGTGGCTGCGTTACCGAGGGCGTTTATATGATTCCCGGCCTTTCCAGCGCTTTATGTTATGGATGGCACCGTCAGGGCTTATCGCGATTCTCGCGGGCTGGTTTGTGACTGAAATCGGCCGTCAGCCGTGGGTGGTTTACGGGTTACAGCGCACAACGGATGCCGTTTCAGCACACGGTGAGATGCATATGAGCATCAGCCTGCTGATCTTCTTTATTGTTTATGGTTCTGTGTTTGGTATCGGCTACATCTATATGATGAAACTGATCCGCAAAGGTATCGCGCCGGAGGTGTCTCATGGGCATTGATTTACCCCTGATTTGGTTCGTCATTATTATATTCAGTACGCTGATGTATA