Homologs in group_2615

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02940 FBDBKF_02940 100.0 Morganella morganii S1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase
EHELCC_03410 EHELCC_03410 100.0 Morganella morganii S2 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase
LHKJJB_01985 LHKJJB_01985 100.0 Morganella morganii S3 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase
HKOGLL_02025 HKOGLL_02025 100.0 Morganella morganii S5 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase
F4V73_RS05385 F4V73_RS05385 94.6 Morganella psychrotolerans - bifunctional 2-methylcitrate dehydratase/aconitate hydratase

Distribution of the homologs in the orthogroup group_2615

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2615

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77243 0.0 808 78 0 483 1 prpD 2-methylcitrate dehydratase Escherichia coli (strain K12)
Q8X693 0.0 803 77 0 483 3 prpD 2-methylcitrate dehydratase Escherichia coli O157:H7
P74840 0.0 796 78 0 473 1 prpD 2-methylcitrate dehydratase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z903 0.0 793 76 0 483 1 prpD 2-methylcitrate dehydratase Salmonella typhi
Q937N6 0.0 779 77 0 476 3 prpD 2-methylcitrate dehydratase Cupriavidus necator
Q6C354 0.0 671 68 3 472 1 PDH1 2-methylcitrate dehydratase, mitochondrial Yarrowia lipolytica (strain CLIB 122 / E 150)
P45859 0.0 603 60 1 471 1 mmgE Citrate/2-methylcitrate dehydratase Bacillus subtilis (strain 168)
Q12428 0.0 602 62 4 476 1 PDH1 Probable 2-methylcitrate dehydratase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q54IJ0 0.0 536 52 6 478 2 prpD Probable 2-methylcitrate dehydratase Dictyostelium discoideum
Q2TXG4 4.82e-159 463 51 10 479 3 oryR 2-methylcitrate dehydratase-like protein oryR Aspergillus oryzae (strain ATCC 42149 / RIB 40)
A0A348HAY4 1.82e-131 393 44 7 480 1 phiI Alkylcitrate dehydratase phiI Fungal sp. (strain ATCC 74256)
B8MKZ4 1.88e-104 322 40 12 485 1 tstI Alkylcitrate dehydratase phiI Talaromyces stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 / NRRL 1006)
Q8NSL3 1.53e-23 107 28 16 435 2 prpD2 2-methylcitrate dehydratase 2 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8NSH9 2.07e-22 103 27 12 412 3 prpD1 2-methylcitrate dehydratase 1 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
O06582 4.83e-18 90 27 11 420 1 prpD 2-methylcitrate dehydratase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
H8F0D6 4.96e-18 90 27 11 420 1 ERDMAN_1266 2-methylcitrate dehydratase Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
P54987 4.26e-11 68 25 19 415 1 Acod1 Cis-aconitate decarboxylase Mus musculus
A6NK06 9.37e-11 67 26 22 467 1 ACOD1 Cis-aconitate decarboxylase Homo sapiens

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_00050
Feature type CDS
Gene prpD
Product bifunctional 2-methylcitrate dehydratase/aconitate hydratase
Location 8194 - 9645 (strand: -1)
Length 1452 (nucleotides) / 483 (amino acids)
In genomic island -

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2615
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF03972 MmgE/PrpD N-terminal domain
PF19305 MmgE/PrpD C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2079 Carbohydrate transport and metabolism (G) G 2-methylcitrate dehydratase PrpD

Kegg Ortholog Annotation(s)

Protein Sequence

MSASFTPQHQEYDKVIQDITDYVLNMDISSDRAYDTAYYCFLDTLGCGLEALEYPACKKMLGPVVPGTIVPNGAKVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILAVADWLSREAIAKGKAPLPLKRVLTAMIKAHEIQGCLALENSFNKVGLDHVVLVKVASTAVVGEMLGLDREQLLSAVSHAWVDGQSLRTYRHAPNTGSRKSWAAGDATSRAVRLALFAQKGEMGYPTVLTAKTWGFYDVLFDGKPFKFQRDYGSYVMENVLFKISFPAEFHSQTAVEAAMTLHHKLAALGKTADDIEKVTIRTHEACIRIIDKHGPLNNPADRDHCIQYMVAVPLIFGRLTAADYEDGIASDSRIDALRARIHCEEDTAFTRDYHDPEKRSIANALTVTLKDGTVLDEVVVEYPVGHARRREEGIPLLLAKFRTNLARMFPETQQQRILNAARDRKTLESMSVSEFMDLFVI

Flanking regions ( +/- flanking 50bp)

TTCGTACCCCTTAAAGCGCGCTAATTATTGATTAAAAAGGAAGATAAAGTATGTCAGCATCTTTTACCCCACAGCATCAAGAGTACGACAAGGTCATTCAGGACATCACTGATTATGTTCTGAATATGGACATCAGCAGTGATCGCGCTTATGACACCGCATATTACTGCTTCCTGGATACCCTGGGTTGCGGTCTGGAAGCCCTGGAATATCCGGCGTGCAAAAAAATGCTCGGCCCTGTCGTGCCGGGAACCATTGTCCCGAACGGCGCCAAAGTACCGGGTACCCAATTCCAGCTGGATCCGGTTCAGGCGGCTTTCAATATCGGTGCCATGATCCGCTGGCTCGATTTCAACGATACCTGGCTGGCGGCGGAATGGGGTCATCCGTCCGATAACCTTGGCGGTATCCTGGCCGTTGCAGACTGGTTATCCCGTGAAGCGATTGCCAAAGGCAAAGCACCGCTGCCGCTGAAACGCGTGCTGACCGCCATGATCAAAGCCCATGAAATTCAGGGCTGCCTGGCACTGGAAAACTCATTTAACAAAGTCGGCCTTGACCACGTTGTACTGGTGAAAGTTGCGTCTACGGCAGTTGTCGGCGAAATGCTGGGGCTGGATCGTGAGCAGTTATTAAGCGCGGTTTCTCATGCATGGGTGGACGGTCAGTCTCTGCGGACCTACCGCCATGCGCCGAATACCGGTTCACGTAAATCCTGGGCTGCGGGTGATGCCACTTCCCGTGCGGTGCGTCTGGCGCTGTTCGCGCAGAAAGGCGAAATGGGCTATCCGACCGTGCTGACCGCCAAAACCTGGGGCTTCTATGACGTGCTGTTTGACGGCAAACCGTTTAAATTCCAGCGCGATTACGGCTCTTATGTGATGGAAAACGTGCTGTTCAAGATTTCATTCCCGGCAGAGTTCCACTCACAGACCGCCGTTGAAGCAGCAATGACACTGCATCACAAACTGGCGGCACTGGGTAAAACCGCAGATGATATTGAGAAAGTCACTATCCGCACCCATGAGGCCTGTATCCGTATTATCGATAAACACGGCCCGCTGAATAACCCGGCTGACCGTGATCACTGTATTCAGTATATGGTGGCAGTTCCGCTGATCTTCGGTCGCCTGACCGCCGCAGATTATGAAGACGGGATCGCGTCAGACAGCCGTATCGATGCCCTGCGTGCCCGCATTCACTGTGAGGAAGATACCGCGTTCACCCGTGATTATCATGATCCGGAAAAACGCTCTATCGCCAACGCCCTGACCGTGACCCTGAAAGACGGTACCGTGCTGGATGAGGTTGTGGTCGAATATCCGGTCGGGCACGCCCGCCGCCGTGAGGAAGGTATTCCGCTGCTGCTGGCGAAATTCCGTACCAATCTGGCGCGTATGTTCCCGGAAACGCAGCAGCAGCGCATTCTGAATGCTGCCCGTGACCGTAAAACACTCGAATCCATGTCAGTCAGCGAGTTTATGGATCTGTTTGTTATTTAATTTCTCTGCCCGGCAACGCAGAAAAACGAAGCGGATACTCAGGTATCCGC