COG2079


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2079, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 2-methylcitrate dehydratase PrpD
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2079 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2591 FBDBKF_02940 282671 284122 1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella morganii S1
1 group_2591 EHELCC_03410 670491 671942 1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella morganii S2
2 group_2591 NLDBIP_00050 8194 9645 -1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella morganii S4
3 group_2591 LHKJJB_01985 383040 384491 1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella morganii S3
4 group_2591 HKOGLL_02025 388551 390002 1 prpD bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella morganii S5
5 group_2591 F4V73_RS05385 1142936 1144387 1 bifunctional 2-methylcitrate dehydratase/aconitate hydratase Morganella psychrotolerans
6 group_4362 PMI_RS03095 681765 683144 1 MmgE/PrpD family protein Proteus mirabilis HI4320