Homologs in group_1939

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14555 FBDBKF_14555 100.0 Morganella morganii S1 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
EHELCC_15360 EHELCC_15360 100.0 Morganella morganii S2 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
NLDBIP_15890 NLDBIP_15890 100.0 Morganella morganii S4 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
HKOGLL_15070 HKOGLL_15070 100.0 Morganella morganii S5 yjhB ADP-ribose pyrophosphatase YjhB, NUDIX family
F4V73_RS07350 F4V73_RS07350 81.3 Morganella psychrotolerans - NUDIX domain-containing protein
PMI_RS04370 PMI_RS04370 62.0 Proteus mirabilis HI4320 - NUDIX hydrolase

Distribution of the homologs in the orthogroup group_1939

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1939

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEI9 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Shigella flexneri
Q0T5N8 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Shigella flexneri serotype 5b (strain 8401)
Q32EZ2 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Shigella dysenteriae serotype 1 (strain Sd197)
Q1RD19 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli (strain UTI89 / UPEC)
B1LI09 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli (strain SMS-3-5 / SECEC)
P0AEI6 2.54e-60 186 58 0 152 1 nudJ Phosphatase NudJ Escherichia coli (strain K12)
B1IUD3 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0AEI7 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TIT9 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AA28 2.54e-60 186 58 0 152 1 nudJ Phosphatase NudJ Escherichia coli O1:K1 / APEC
A7ZZ89 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli O9:H4 (strain HS)
B1XA44 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli (strain K12 / DH10B)
P0AEI8 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli O157:H7
A7ZKS4 2.54e-60 186 58 0 152 3 nudJ Phosphatase NudJ Escherichia coli O139:H28 (strain E24377A / ETEC)
Q3Z2Y5 3.41e-60 186 58 0 152 3 nudJ Phosphatase NudJ Shigella sonnei (strain Ss046)
Q31ZL0 3.41e-60 186 58 0 152 3 nudJ Phosphatase NudJ Shigella boydii serotype 4 (strain Sb227)
Q3U2V3 7.04e-07 50 24 4 149 1 Nudt18 8-oxo-dGDP phosphatase NUDT18 Mus musculus
Q6ZVK8 7.46e-07 50 32 2 81 1 NUDT18 8-oxo-dGDP phosphatase NUDT18 Homo sapiens
Q641Y7 1.7e-06 49 33 2 81 2 Nudt18 8-oxo-dGDP phosphatase NUDT18 Rattus norvegicus
P41354 2.25e-06 48 29 2 117 1 mutX 8-oxo-dGTP diphosphatase Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q9CA40 2.7e-06 47 32 4 106 1 NUDT1 Nudix hydrolase 1 Arabidopsis thaliana
P59659 3.02e-06 47 29 2 117 3 mutX 8-oxo-dGTP diphosphatase Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q4V8V2 4.76e-06 48 32 5 125 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Danio rerio
A8HRT0 8.3e-06 46 37 2 78 3 rppH RNA pyrophosphohydrolase Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / LMG 6465 / NBRC 14845 / NCIMB 13405 / ORS 571)
O06972 1.26e-05 46 25 3 120 3 yvcI Uncharacterized Nudix hydrolase YvcI Bacillus subtilis (strain 168)
Q9C6Z2 1.67e-05 45 31 3 96 1 NUDT25 Nudix hydrolase 25 Arabidopsis thaliana
Q5M8V2 2.03e-05 46 31 5 123 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Xenopus tropicalis
Q16BL5 2.11e-05 45 45 1 57 3 rppH RNA pyrophosphohydrolase Roseobacter denitrificans (strain ATCC 33942 / OCh 114)
Q9CAF2 2.35e-05 45 25 6 151 1 NUDT26 Nudix hydrolase 26, chloroplastic Arabidopsis thaliana
Q94B74 2.96e-05 45 26 1 115 1 NUDT2 Nudix hydrolase 2 Arabidopsis thaliana
Q5PQ04 3.03e-05 45 30 4 127 2 nudt17 Nucleoside diphosphate-linked moiety X motif 17 Xenopus laevis
Q568Q0 4.55e-05 45 32 2 81 2 nudt18 8-oxo-dGDP phosphatase NUDT18 Danio rerio
Q7ZWC3 4.99e-05 44 27 4 148 1 nudt1 Oxidized purine nucleoside triphosphate hydrolase Danio rerio
Q92LA8 7.71e-05 43 43 2 65 3 rppH RNA pyrophosphohydrolase Rhizobium meliloti (strain 1021)
A6WXT0 0.00011 43 34 3 85 3 rppH RNA pyrophosphohydrolase Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37)
P9WIX7 0.00012 44 38 2 77 1 mutT4 Putative mutator protein MutT4 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIX6 0.00012 44 38 2 77 3 mutT4 Putative mutator protein MutT4 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A4YKE4 0.000175 43 34 2 78 3 rppH RNA pyrophosphohydrolase Bradyrhizobium sp. (strain ORS 278)
A5E954 0.000282 42 34 2 78 3 rppH RNA pyrophosphohydrolase Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
Q8CH40 0.000322 43 26 2 104 1 Nudt6 Nucleoside diphosphate-linked moiety X motif 6 Mus musculus
Q9RVK2 0.000403 42 35 1 78 1 DR_1025 Nudix hydrolase DR_1025 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P13420 0.000481 42 27 3 135 1 nudt6 Nucleoside diphosphate-linked moiety X motif 6 Xenopus laevis
Q98F04 0.000556 41 37 2 67 3 rppH RNA pyrophosphohydrolase Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q3SVH3 0.00066 41 33 2 78 3 rppH RNA pyrophosphohydrolase Nitrobacter winogradskyi (strain ATCC 25391 / DSM 10237 / CIP 104748 / NCIMB 11846 / Nb-255)
Q9FNH4 0.000885 41 36 3 74 1 NUDT27 Nudix hydrolase 27, chloroplastic Arabidopsis thaliana
P70563 0.001 41 28 1 90 1 Nudt6 Nucleoside diphosphate-linked moiety X motif 6 Rattus norvegicus

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_15950
Feature type CDS
Gene yjhB
Product ADP-ribose pyrophosphatase YjhB, NUDIX family
Location 80479 - 80946 (strand: -1)
Length 468 (nucleotides) / 155 (amino acids)

Contig

Accession ZDB_374
Length 116739 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1939
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00293 NUDIX domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1051 Nucleotide transport and metabolism (F) F ADP-ribose pyrophosphatase YjhB, NUDIX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12152 phosphatase NudJ [EC:3.6.1.-] Riboflavin metabolism -

Protein Sequence

MIFRPHVTVACLVSAGEKFLVVEETVNGNATWNQPAGHLEAGETLLAAAERELYEETGIRAAPDALLKIHQWVAPDGTPFIRFLFRVLLDSECETHPQDSDIDRCHWVSADEIIHSPILRSPLVKESMFAWFAAEPLPLSLLGTFGDAFGEPVSP

Flanking regions ( +/- flanking 50bp)

TGGTGATTTTGCCCTTGATACCCTTGCCCCCGGCGAATGGAGAGAAGTGAATGATATTCAGACCTCATGTGACAGTGGCCTGCCTGGTCAGCGCCGGTGAAAAATTTCTGGTGGTGGAAGAAACCGTTAACGGCAACGCCACCTGGAATCAGCCCGCCGGGCATCTGGAAGCCGGAGAAACCCTGCTTGCCGCCGCAGAGCGCGAGCTGTATGAAGAAACCGGGATCCGTGCTGCTCCCGATGCCCTGCTGAAAATTCATCAGTGGGTTGCACCGGACGGTACACCGTTTATCCGTTTTCTGTTCCGTGTGCTGCTGGACAGTGAGTGTGAGACGCACCCGCAGGACAGCGATATCGACCGCTGTCACTGGGTCAGTGCGGATGAGATTATTCACAGCCCGATCCTGCGCTCCCCGCTGGTAAAAGAAAGTATGTTTGCCTGGTTTGCCGCCGAACCGCTGCCGCTCTCGCTGCTGGGAACGTTCGGGGATGCGTTCGGGGAACCGGTTTCCCCGTAATGCATTGCGCGGAACAAACTGCGGAAAATTCTTTGCTGAAAATTCTTTGC