Homologs in group_33

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08950 FBDBKF_08950 100.0 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09005 FBDBKF_09005 54.3 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10405 EHELCC_10405 54.3 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10460 EHELCC_10460 100.0 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10750 NLDBIP_10750 54.3 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10805 NLDBIP_10805 100.0 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10605 LHKJJB_10605 54.3 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13610 HKOGLL_13610 100.0 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13665 HKOGLL_13665 54.3 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS10965 F4V73_RS10965 51.4 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS11020 F4V73_RS11020 58.8 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS18495 F4V73_RS18495 26.6 Morganella psychrotolerans - mobile mystery protein A
PMI_RS01265 PMI_RS01265 42.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS01315 PMI_RS01315 37.3 Proteus mirabilis HI4320 mrpJ transcriptional regulator MrpJ

Distribution of the homologs in the orthogroup group_33

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_33

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q92HV3 2.43e-09 53 33 0 72 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P0C5S2 2.7e-09 54 40 0 60 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 2.7e-09 54 40 0 60 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
Q9ZD50 2.98e-09 53 33 0 72 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
P15017 7.17e-07 47 35 0 71 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
Q8TZX4 4.5e-05 43 32 0 58 3 PF1851 Putative HTH-type transcriptional regulatory protein PF1851 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
O59472 6.38e-05 43 34 0 58 3 PH1808 Putative HTH-type transcriptional regulatory protein PH1808 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
P06966 0.000248 41 30 0 72 4 dicA HTH-type transcriptional regulator DicA Escherichia coli (strain K12)
P55681 0.000518 40 28 0 76 4 NGR_a01020 Uncharacterized HTH-type transcriptional regulator y4wC Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_10550
Feature type CDS
Gene hipB
Product Transcriptional regulator, contains XRE-family HTH domain
Location 74659 - 74988 (strand: -1)
Length 330 (nucleotides) / 109 (amino acids)

Contig

Accession ZDB_367
Length 191445 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_33
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MTDILYDSDMASVNRAVGGRLFCRRKALGYSGQQIAACLGISQQQLSRYERGQSRINVGLLVRAADILKTPVGWFFAGCQDNALYEESLSVQSDIYTAASVTSKSEYLN

Flanking regions ( +/- flanking 50bp)

TTTATTCCCGAATGTATTTCCGGGGAATGTTATTTCTGAAGGTAATAAATATGACAGATATTCTATATGATTCCGATATGGCATCGGTAAACCGGGCTGTCGGTGGCCGGCTTTTTTGCAGACGAAAAGCGCTGGGTTATTCCGGACAGCAGATTGCGGCCTGTCTGGGGATCAGTCAGCAGCAATTATCCCGTTATGAACGGGGGCAAAGCCGGATTAATGTCGGCCTGCTGGTCAGGGCAGCAGATATTTTAAAGACACCGGTCGGCTGGTTTTTTGCCGGGTGTCAGGACAACGCTTTATATGAAGAAAGTCTCAGTGTTCAGTCTGATATTTATACAGCGGCATCAGTGACATCAAAATCAGAATATCTCAACTGAGAGAAAGCGGCTCCGCCGGTATTGCGGAGCCTCAGATTGTTGGCAAAGTC