Homologs in group_33

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14 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_08950 FBDBKF_08950 51.4 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
FBDBKF_09005 FBDBKF_09005 74.8 Morganella morganii S1 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10405 EHELCC_10405 74.8 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
EHELCC_10460 EHELCC_10460 51.4 Morganella morganii S2 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10750 NLDBIP_10750 74.8 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
NLDBIP_10805 NLDBIP_10805 51.4 Morganella morganii S4 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10550 LHKJJB_10550 51.4 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
LHKJJB_10605 LHKJJB_10605 74.8 Morganella morganii S3 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13610 HKOGLL_13610 51.4 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
HKOGLL_13665 HKOGLL_13665 74.8 Morganella morganii S5 hipB Transcriptional regulator, contains XRE-family HTH domain
F4V73_RS11020 F4V73_RS11020 62.1 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
F4V73_RS18495 F4V73_RS18495 25.0 Morganella psychrotolerans - mobile mystery protein A
PMI_RS01265 PMI_RS01265 40.2 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator
PMI_RS01315 PMI_RS01315 37.9 Proteus mirabilis HI4320 mrpJ transcriptional regulator MrpJ

Distribution of the homologs in the orthogroup group_33

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_33

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15017 2.94e-09 53 38 0 70 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
P0C5S2 2.89e-08 52 37 0 67 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 2.89e-08 52 37 0 67 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
Q9ZD50 6.77e-06 45 32 0 64 4 RP497 Uncharacterized HTH-type transcriptional regulator RP497 Rickettsia prowazekii (strain Madrid E)
Q92HV3 6.94e-06 45 32 0 64 4 RC0668 Uncharacterized HTH-type transcriptional regulator RC0668 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O31943 7.76e-05 42 27 0 72 4 yonR SPbeta prophage-derived uncharacterized HTH-type transcriptional regulator YonR Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS10965
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 334104 - 334463 (strand: 1)
Length 360 (nucleotides) / 119 (amino acids)

Contig

Accession term accessions NZ_VXKB01000002 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 573139 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_33
Orthogroup size 15
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MTTEYTESSVNEFIGYRIFRKRKEQGWSGERLARRLGISQQQFSRYERGRSQINVSLLVKAAEILQTPVSWFLADCSGRLSYREEIRVKADIYAAESLPEYGISAPSRYNRRTHEGKQT

Flanking regions ( +/- flanking 50bp)

AGTCTGCATCCTGAATGACGTTGGGTATAATCATATTAAGGTATAAAAATATGACTACAGAATATACAGAATCTTCCGTTAATGAATTTATCGGATACCGGATTTTTCGCAAACGCAAAGAACAAGGCTGGTCCGGTGAACGGCTGGCACGTCGTCTGGGAATTAGTCAGCAGCAGTTCTCGCGCTATGAGCGGGGACGCAGTCAGATTAATGTCAGTTTGCTGGTCAAAGCTGCTGAAATATTACAAACGCCGGTCAGCTGGTTTCTGGCTGATTGCTCAGGCCGACTCTCATACCGGGAGGAGATCAGGGTAAAGGCGGACATATATGCCGCAGAATCACTGCCGGAGTACGGGATATCAGCCCCGTCCCGGTATAACAGGAGAACTCATGAAGGAAAACAAACGTAAACACCTGATGCAGTCAGAGGTGGAAAGAATGATGACTGCTGCAGAAAATG