Homologs in group_303

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07995 FBDBKF_07995 100.0 Morganella morganii S1 tolC Outer membrane protein TolC
EHELCC_13825 EHELCC_13825 100.0 Morganella morganii S2 tolC Outer membrane protein TolC
NLDBIP_14270 NLDBIP_14270 100.0 Morganella morganii S4 tolC Outer membrane protein TolC
HKOGLL_08130 HKOGLL_08130 100.0 Morganella morganii S5 tolC Outer membrane protein TolC
F4V73_RS03920 F4V73_RS03920 22.5 Morganella psychrotolerans - Cu(I)/Ag(I) efflux RND transporter outer membrane protein
F4V73_RS12990 F4V73_RS12990 54.6 Morganella psychrotolerans - TolC family outer membrane protein
PMI_RS01340 PMI_RS01340 35.9 Proteus mirabilis HI4320 - TolC family outer membrane protein

Distribution of the homologs in the orthogroup group_303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q03027 8.45e-49 176 31 3 444 3 aprF Alkaline protease secretion protein AprF Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P23598 9.74e-44 162 30 7 439 3 prtF Proteases secretion protein PrtF Dickeya chrysanthemi
Q9K2Y1 2.81e-14 78 23 8 421 1 tolC Outer membrane protein TolC Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8G0Y6 1.6e-10 66 24 8 372 1 bepC Outer membrane efflux protein BepC Brucella suis biovar 1 (strain 1330)
P02930 1.94e-09 63 23 14 432 1 tolC Outer membrane protein TolC Escherichia coli (strain K12)
Q54001 1.34e-08 60 22 13 456 1 tolC Outer membrane protein TolC Salmonella enteritidis
Q93PU3 8.67e-05 48 25 12 415 2 ttgI Toluene efflux pump outer membrane protein TtgI Pseudomonas putida (strain DOT-T1E)
O31101 8.67e-05 48 25 12 415 2 srpC Solvent efflux pump outer membrane protein SrpC Pseudomonas putida
P77211 0.000153 47 24 6 239 1 cusC Cation efflux system protein CusC Escherichia coli (strain K12)
Q8CWA4 0.000228 47 24 6 239 3 cusC Cation efflux system protein CusC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9KWV3 0.000445 46 27 14 343 2 ttgF Toluene efflux pump outer membrane protein TtgF Pseudomonas putida (strain DOT-T1E)
Q849R1 0.000445 46 27 14 343 3 sepC Probable efflux pump outer membrane protein SepC Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q8XBY3 0.000523 45 23 6 239 3 cusC Cation efflux system protein CusC Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_08580
Feature type CDS
Gene tolC
Product Outer membrane protein TolC
Location 32097 - 33440 (strand: -1)
Length 1344 (nucleotides) / 447 (amino acids)

Contig

Accession ZDB_365
Length 192330 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_303
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF02321 Outer membrane efflux protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1538 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein TolC

Protein Sequence

MHSAKRLFAALLCLLPAGVQAVTLSELGQSALNNDLSFRAAGKAYEAEQAEVAAGKSHLLPSVGLSYQNTPYNRLTQRAPVTSQRHYSSHSLNLVVTQPLFDYTAYHQYRAAQIRGTAAESRLQIQQAELINRLVSAYLNLACALELQKTDRLRLALNTAQLGAAQRLLQLGEGTVTEVESARARLRQRQAQLAETEAESLNALLILSDLTGLPQLRMQDLPALKAGDFRLPHLNDGDYAAQEQQMQAVHPEIKAAQQETSLAKAAAEVQRGAFMPSAQLFAAWSDTQSDSNDTVGQRYRNLSAGIHLSVPLFSGGKDLAGMRKVSAQIQQAQFEQDALVQTLRRDLARQYQVFRHSSIQLAALEQAAAAARLQVTAAEKGYAAGQNSQPEVAHARDQYYQAEQELIKARYDGLLAWFRLRHYSSAPETGLFRQIEDYFTVTERPSH

Flanking regions ( +/- flanking 50bp)

AAGCCTGTGACTGACCGGCTCTTTTTCGCACTGACCGAGGAGTGATCTGTATGCATTCTGCAAAACGCCTTTTTGCGGCACTGTTGTGTCTGTTACCCGCCGGTGTGCAGGCGGTGACATTATCTGAACTCGGTCAGTCCGCACTGAACAATGATCTGTCATTCCGTGCTGCGGGAAAGGCTTATGAGGCGGAACAGGCGGAGGTTGCCGCCGGGAAATCGCACCTGCTGCCGTCCGTCGGGCTGAGTTATCAGAACACGCCGTATAACCGGCTGACACAGCGGGCACCGGTGACCTCTCAGCGGCATTACAGCAGCCATTCCCTCAACCTGGTGGTGACACAGCCGCTGTTTGATTACACAGCATACCATCAGTACCGGGCAGCACAGATACGCGGTACTGCCGCAGAGAGCCGCTTGCAGATACAACAGGCAGAGCTTATCAACCGGCTGGTCTCTGCGTATCTGAACCTGGCTTGTGCTCTGGAACTACAGAAAACAGACCGGCTCCGGCTGGCACTGAATACTGCTCAGCTGGGGGCTGCACAGCGCCTTTTGCAGCTCGGGGAGGGCACTGTGACAGAGGTTGAATCCGCCCGTGCCCGTCTGCGGCAGCGTCAGGCGCAGCTCGCGGAAACAGAAGCGGAAAGCCTGAATGCGCTGCTGATATTGTCTGATCTTACCGGTCTGCCGCAGCTGCGGATGCAGGATCTTCCGGCACTGAAAGCGGGGGATTTCCGGTTACCGCACCTGAATGACGGTGATTATGCGGCTCAGGAACAGCAGATGCAGGCAGTGCATCCGGAAATCAAAGCGGCACAACAGGAAACCTCACTGGCAAAAGCGGCGGCAGAGGTACAGCGCGGGGCGTTTATGCCGTCGGCGCAGCTCTTTGCTGCCTGGTCAGATACCCAATCAGACAGCAATGATACTGTCGGTCAGCGTTACCGTAATCTCAGTGCCGGGATCCATCTTTCAGTTCCGCTGTTCAGCGGCGGAAAAGATCTGGCGGGGATGCGCAAGGTGTCTGCTCAGATTCAGCAGGCGCAGTTTGAACAGGATGCACTGGTACAGACACTCCGGCGTGACCTGGCACGTCAGTATCAGGTGTTCCGCCACAGTAGTATACAGCTGGCGGCGCTGGAGCAGGCCGCAGCGGCTGCGCGGTTACAGGTAACGGCGGCGGAAAAAGGGTATGCGGCGGGGCAGAACAGTCAGCCGGAGGTGGCACATGCCCGGGATCAGTATTATCAGGCGGAGCAGGAGCTGATAAAAGCCCGCTATGACGGGCTTCTGGCCTGGTTCCGGCTGCGTCATTACAGCAGCGCGCCGGAAACCGGGCTTTTCAGGCAGATTGAGGACTATTTTACAGTGACGGAGAGGCCGTCTCACTGACCGCCGGGTTCGGCATGTTGACATGCAGGCAGTCGATCAGGCGGATATTT