Homologs in group_1152

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06600 FBDBKF_06600 100.0 Morganella morganii S1 radA DNA repair protein RadA
EHELCC_09645 EHELCC_09645 100.0 Morganella morganii S2 radA DNA repair protein RadA
NLDBIP_10025 NLDBIP_10025 100.0 Morganella morganii S4 radA DNA repair protein RadA
HKOGLL_07280 HKOGLL_07280 100.0 Morganella morganii S5 radA DNA repair protein RadA
F4V73_RS15345 F4V73_RS15345 95.9 Morganella psychrotolerans radA DNA repair protein RadA
PMI_RS12385 PMI_RS12385 91.3 Proteus mirabilis HI4320 radA DNA repair protein RadA

Distribution of the homologs in the orthogroup group_1152

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1152

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P24517 0.0 870 91 1 461 3 radA DNA repair protein RadA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P24554 0.0 869 90 1 461 1 radA DNA repair protein RadA Escherichia coli (strain K12)
P45266 0.0 762 80 2 461 3 radA DNA repair protein RadA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P96963 0.0 594 61 3 460 3 radA DNA repair protein RadA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P37572 2.97e-145 426 48 6 458 1 radA DNA repair protein RadA Bacillus subtilis (strain 168)
Q9KGG1 4.63e-145 425 46 5 459 3 radA DNA repair protein RadA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q92F42 1.26e-134 398 45 6 459 3 radA DNA repair protein RadA Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q48761 2.85e-134 397 45 6 459 3 radA DNA repair protein RadA Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
P74391 2.2e-127 382 45 6 460 3 radA DNA repair protein RadA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O66827 1.14e-125 375 43 4 453 3 radA DNA repair protein RadA Aquifex aeolicus (strain VF5)
Q9A1K1 1.29e-121 365 43 4 445 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M1
Q8P2Q5 1.41e-121 365 43 4 445 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M18 (strain MGAS8232)
Q5XDZ7 1.41e-121 365 43 4 445 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
O84300 1.18e-120 363 41 3 462 3 radA DNA repair protein RadA Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q1RJR7 1.36e-120 362 43 4 427 3 radA DNA repair protein RadA Rickettsia bellii (strain RML369-C)
P0DD79 2.41e-120 362 43 3 431 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain SSI-1)
P0DD78 2.41e-120 362 43 3 431 3 radA DNA repair protein RadA Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
Q92HG1 8.45e-120 360 43 4 433 3 radA DNA repair protein RadA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4UL56 1.58e-119 359 43 6 432 3 radA DNA repair protein RadA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q2YMH5 1.54e-118 358 44 5 434 3 radA DNA repair protein RadA Brucella abortus (strain 2308)
Q9PN90 9.06e-117 352 42 8 457 3 radA DNA repair protein RadA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q8DRP0 2.55e-116 350 44 3 418 1 radA DNA repair protein RadA Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q9PK96 1.22e-113 345 42 5 457 3 radA DNA repair protein RadA Chlamydia muridarum (strain MoPn / Nigg)
Q68WI9 4.18e-113 343 40 4 431 3 radA DNA repair protein RadA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9ZMK9 9.58e-113 342 42 5 427 3 radA DNA repair protein RadA Helicobacter pylori (strain J99 / ATCC 700824)
Q9ZD04 7.68e-112 340 41 5 427 3 radA DNA repair protein RadA Rickettsia prowazekii (strain Madrid E)
Q9Z9C8 8.65e-112 340 41 3 462 3 radA DNA repair protein RadA Chlamydia pneumoniae
P56148 1.53e-111 339 41 5 427 3 radA DNA repair protein RadA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9RVC4 7.77e-108 332 45 5 427 3 radA DNA repair protein RadA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
A0R563 1.01e-97 304 37 6 460 1 radA DNA repair protein RadA Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
O83985 1.98e-97 303 39 7 445 3 radA DNA repair protein RadA Treponema pallidum (strain Nichols)
P9WHJ9 5.88e-96 300 38 4 428 1 radA DNA repair protein RadA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHJ8 5.88e-96 300 38 4 428 3 radA DNA repair protein RadA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P65954 5.88e-96 300 38 4 428 3 radA DNA repair protein RadA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P42425 1.76e-07 57 28 3 136 1 lon2 Lon protease 2 Bacillus subtilis (strain 168)
O28184 7.85e-07 53 25 6 202 3 radB DNA repair and recombination protein RadB Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
A3CXI2 1.33e-06 52 26 7 223 3 radB DNA repair and recombination protein RadB Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
O29883 7.66e-06 52 25 3 153 1 AF_0364 Archaeal Lon protease Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q58812 1.15e-05 51 25 2 113 1 MJ1417 Archaeal Lon protease Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P57549 1.17e-05 51 28 2 108 3 lon Lon protease Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P81415 1.55e-05 49 24 8 231 1 radB DNA repair and recombination protein RadB Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P95547 3.37e-05 48 25 7 220 1 radB DNA repair and recombination protein RadB Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q8NKS6 4.92e-05 49 28 1 92 1 lon Archaeal Lon protease Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
P0CQ17 5.27e-05 49 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain B-3501A)
P0CQ16 5.45e-05 49 31 1 98 3 PIM1 Lon protease homolog, mitochondrial Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
Q6BJJ8 7.36e-05 49 27 2 111 3 DEHA2G01892g Lon protease homolog 2, peroxisomal Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
Q99133 0.000112 47 28 8 181 3 RAD51 DNA repair protein RAD51 Ustilago maydis (strain 521 / FGSC 9021)
B3E7K2 0.000143 48 28 3 128 3 lon Lon protease Trichlorobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ)
P46067 0.000148 48 26 2 108 2 lon Lon protease Erwinia amylovora
Q8K988 0.000167 47 25 2 108 3 lon Lon protease Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9XW87 0.000181 47 30 1 88 3 lonp-2 Lon protease homolog 2, peroxisomal Caenorhabditis elegans
P73860 0.000206 47 23 10 217 1 kaiC2 Circadian clock protein KaiC2 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
A8F811 0.000222 47 29 2 95 3 lon Lon protease Pseudothermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)
Q9UYC6 0.000239 47 28 1 92 3 lon Archaeal Lon protease Pyrococcus abyssi (strain GE5 / Orsay)
Q9XED7 0.000265 46 26 8 188 2 RAD51B DNA repair protein RAD51 homolog B Zea mays
B8BDV1 0.000294 47 29 3 109 2 LON1 Lon protease homolog 2, peroxisomal Oryza sativa subsp. indica
B4RI01 0.000301 47 25 2 109 3 lon Lon protease Phenylobacterium zucineum (strain HLK1)
Q0J032 0.000302 47 29 3 109 2 Os09g0533400 Lon protease homolog 2, peroxisomal Oryza sativa subsp. japonica
Q9HSC3 0.000355 47 27 1 93 3 VNG_0303G Archaeal Lon protease Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
B8EMF2 0.000363 47 28 2 106 3 lon Lon protease Methylocella silvestris (strain DSM 15510 / CIP 108128 / LMG 27833 / NCIMB 13906 / BL2)
A1U2E3 0.000406 46 30 4 138 3 recA Protein RecA Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8)
Q40134 0.000491 45 26 8 188 2 RAD51 DNA repair protein RAD51 homolog Solanum lycopersicum
Q72JM6 0.000578 46 29 1 85 3 lon2 Lon protease 2 Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
B9WEC4 0.000648 46 32 2 85 3 CD36_85340 Lon protease homolog 2, peroxisomal Candida dubliniensis (strain CD36 / ATCC MYA-646 / CBS 7987 / NCPF 3949 / NRRL Y-17841)
P74956 0.000719 45 28 2 108 3 lon Lon protease Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P0A9M0 0.000744 45 26 2 108 1 lon Lon protease Escherichia coli (strain K12)
P0A9M1 0.000744 45 26 2 108 3 lon Lon protease Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
B2V6N0 0.000802 45 32 1 79 3 lon Lon protease Sulfurihydrogenibium sp. (strain YO3AOP1)
Q27297 0.000858 45 26 7 173 1 spn-A DNA repair protein Rad51 homolog Drosophila melanogaster
P36601 0.001 45 27 9 216 1 rhp51 DNA repair protein rhp51 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
O57859 0.001 44 25 10 226 3 radB DNA repair and recombination protein RadB Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
B8F9K1 0.001 45 30 1 79 3 lon Lon protease Desulfatibacillum aliphaticivorans

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_07730
Feature type CDS
Gene radA
Product DNA repair protein RadA
Location 54029 - 55417 (strand: 1)
Length 1389 (nucleotides) / 462 (amino acids)

Contig

Accession ZDB_364
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1152
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13481 AAA domain
PF13541 Subunit ChlI of Mg-chelatase
PF18073 Rubredoxin metal binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1066 Replication, recombination and repair (L) L DNA repair protein RadA/Sms, contains AAA+ ATPase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K04485 DNA repair protein RadA/Sms - -

Protein Sequence

MAKPAKRAFVCNECGADYPRWQGQCTACQAWNTITEVRLASVSSSAARNDRLSGYAGQSGVSKVQKLSEISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTMCQLAAQMKTLYVTGEESLQQVAMRAHRLGLPMDNLNMLSETAIEQICLIAEQEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCSVMLDGEADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPIPRDVVIFGEVGLAGEIRPVPSGQERISEAAKHGFKRAIVPNANRPKNPPPGMQVFGVKKLSDALSVLDELE

Flanking regions ( +/- flanking 50bp)

TGGTCTGAAACACGAAGAACGTTAATTTATCAGTTATTACGGGGTCACGAGTGGCAAAACCAGCAAAACGCGCCTTTGTCTGTAACGAGTGCGGGGCGGATTATCCCCGCTGGCAGGGGCAGTGCACCGCGTGTCAGGCGTGGAATACCATCACGGAAGTCCGGCTGGCTTCTGTCTCATCGTCTGCGGCACGCAATGATCGCCTCAGCGGCTATGCGGGGCAGAGCGGTGTCAGCAAAGTACAGAAGCTGTCGGAAATCAGTCTTGAGGAACTGCCGCGTTTCTCCACCGGTTTCAAAGAATTTGACCGTGTGCTGGGCGGCGGCGTGGTACCGGGCAGTGCCATTCTGATCGGCGGTAACCCGGGCGCCGGGAAAAGTACCCTGCTGTTACAGACCATGTGCCAGCTCGCCGCACAGATGAAAACCCTGTATGTCACGGGGGAGGAATCCTTACAGCAGGTGGCGATGCGGGCGCACCGCCTCGGGCTGCCGATGGACAATCTCAATATGCTGTCGGAAACGGCGATTGAGCAGATTTGCCTGATCGCAGAGCAGGAACAGCCGAAGCTGATGGTGATTGACTCCATCCAGGTGATGCACATGGCGGATATCCAGTCTTCGCCGGGCAGTGTGGCACAGGTGCGCGAAACCGCCGCCTATCTGACCCGCTTTGCCAAAACCCGCGGGGTGGCGATCATTATGGTCGGTCACGTCACCAAAGACGGCTCTCTGGCAGGGCCGAAGGTACTTGAACATTGTATTGACTGCTCGGTCATGCTCGACGGTGAGGCCGATTCCCGTTTCCGCACACTGCGCAGCCATAAAAACCGCTTTGGTGCGGTGAATGAGCTGGGTGTGTTTGCCATGACGGAGCAGGGGCTGCGCGAGGTGAGCAACCCGTCCGCCATTTTCCTGAGCCGCGGGGATGAAATCACGTCCGGCAGTTCGGTGATGGTGGTCTGGGAAGGAACCCGTCCGCTGCTGGTGGAAATCCAGGCGCTGGTGGATCACTCGATGATGTCGAATCCGCGCCGTGTGGCGGTCGGGCTGGAGCAGAACCGGCTGGCTATCCTGCTGGCGGTACTGCATCGTCACGGCGGATTGCAGATGTCGGATCAGGATGTGTTCGTCAACGTGGTCGGCGGGGTGAAAGTCACCGAAACCAGTGCGGATCTGGCGCTGCTGCTCTCGCTGGTCTCCAGTTTCCGTGACCGGCCGATCCCGCGTGATGTGGTGATCTTCGGCGAAGTCGGGCTGGCGGGAGAGATCCGTCCGGTGCCGAGCGGCCAGGAGCGGATCTCGGAAGCGGCCAAACACGGTTTTAAACGGGCGATTGTGCCGAATGCCAACCGCCCGAAAAACCCGCCGCCGGGTATGCAGGTGTTCGGGGTGAAAAAACTGTCGGATGCCCTGTCTGTGCTGGATGAACTGGAATAAGTGAGGCAGAGAATGACCGATTTTTCCTATCTGAAACAAGCCATTAAACA