Homologs in group_2405

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19275 FBDBKF_19275 100.0 Morganella morganii S1 hybB Ni/Fe-hydrogenase cytochrome b subunit
EHELCC_07560 EHELCC_07560 100.0 Morganella morganii S2 hybB Ni/Fe-hydrogenase cytochrome b subunit
NLDBIP_07885 NLDBIP_07885 100.0 Morganella morganii S4 hybB Ni/Fe-hydrogenase cytochrome b subunit
HKOGLL_03510 HKOGLL_03510 100.0 Morganella morganii S5 hybB Ni/Fe-hydrogenase cytochrome b subunit
F4V73_RS12035 F4V73_RS12035 91.6 Morganella psychrotolerans hybB Ni/Fe-hydrogenase cytochrome b subunit
PMI_RS00160 PMI_RS00160 67.1 Proteus mirabilis HI4320 hybB Ni/Fe-hydrogenase cytochrome b subunit

Distribution of the homologs in the orthogroup group_2405

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2405

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37180 0.0 628 78 1 393 1 hybB Probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit Escherichia coli (strain K12)
P33390 1.38e-42 156 31 11 375 3 DVU_0534 Protein DVU_0534 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q72E86 6.32e-08 57 24 14 389 1 qrcD Menaquinone reductase, integral membrane subunit Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_07420
Feature type CDS
Gene hybB
Product Ni/Fe-hydrogenase cytochrome b subunit
Location 213341 - 214522 (strand: 1)
Length 1182 (nucleotides) / 393 (amino acids)

Contig

Accession ZDB_363
Length 233386 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2405
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03916 Polysulphide reductase, NrfD

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5557 Energy production and conversion (C) C Ni/Fe-hydrogenase 2 integral membrane subunit HybB

Protein Sequence

MSHDPKPLGGKLFSKPIIIFGPLVILCVLLIVKRLVFGLGSVSDLNGGYPWGIWIAFDLLIGTGFACGGWALAWAVYVFNKGEYHPLVRPALLASLLGYSLGGLSITIDLGRYWNMPNFFIPGIFNVNSVLLETAVCMTIYIGVMALELAPAFCERMGWKVSLKRLNKIMFFVIALGALLPAMHQSSMGSLMIAAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVVFEGSLVQSGLKGNGPDEKRLFGKLALTVSVLMALFLVLRFGELIYRGKLGLAFAGDYYSVLFWCEIVLMAIALAVFSIPAFRRDSRLLYIGALSMMLGCAAWRLAYSLLAFDPGNGYHYFPATEELLISIGFVAVEICAYLFLIRLLPILPAVNKTAAHPYHEASKS

Flanking regions ( +/- flanking 50bp)

GCTGGTGCGCCGCAACAGCAAAAATGACACTCACGACGGAGGTGATGATCATGAGTCATGATCCCAAACCCCTCGGCGGCAAATTATTCAGTAAGCCGATCATCATTTTCGGGCCGCTTGTTATCCTCTGCGTTCTGCTTATCGTCAAACGTCTGGTCTTCGGGCTGGGGTCAGTCTCTGATCTGAACGGCGGTTATCCGTGGGGGATCTGGATTGCGTTTGACCTGCTGATCGGCACCGGTTTTGCCTGCGGCGGCTGGGCGCTGGCGTGGGCGGTGTATGTGTTCAACAAAGGGGAATATCACCCGCTGGTGCGTCCGGCGCTGCTGGCAAGCCTGCTGGGGTATTCACTGGGCGGATTGTCTATCACCATTGACCTCGGCCGTTACTGGAATATGCCGAACTTCTTTATTCCGGGTATTTTCAACGTTAACTCCGTCCTGCTGGAAACCGCGGTCTGTATGACGATTTATATCGGCGTGATGGCACTGGAACTGGCACCGGCGTTCTGTGAGCGCATGGGCTGGAAAGTCTCCCTTAAGCGGCTGAACAAAATCATGTTCTTTGTGATAGCGCTCGGCGCACTGTTACCGGCCATGCACCAGTCTTCAATGGGTTCCCTGATGATTGCGGCGGGCTATAAAGTGCATCCGCTGTGGCAGAGCTATGAAATGCTGCCGCTGTTCTCTCTGCTCACCGCCTTTATTATGGGATTCTCCATTGTGGTATTTGAGGGCTCCCTGGTACAGAGCGGCCTGAAAGGCAACGGCCCCGATGAAAAACGCCTGTTCGGCAAGCTGGCACTGACCGTCAGTGTGCTGATGGCGCTGTTTCTGGTGCTGCGCTTCGGGGAACTGATCTACCGCGGCAAGCTCGGACTGGCTTTTGCGGGAGATTATTACTCTGTGCTGTTCTGGTGCGAGATTGTGCTGATGGCGATTGCACTGGCGGTCTTCAGTATCCCGGCGTTCCGCCGTGACTCCCGGCTGCTCTACATTGGCGCACTGAGCATGATGCTCGGCTGTGCGGCATGGCGTCTCGCCTATTCATTGCTGGCGTTTGATCCCGGCAATGGCTATCACTACTTCCCGGCGACGGAAGAACTGTTAATTTCCATTGGTTTCGTGGCTGTTGAGATCTGCGCTTACCTTTTCCTGATCCGCCTGTTACCGATACTCCCTGCAGTCAATAAAACCGCAGCTCACCCTTATCATGAGGCAAGCAAGTCATGAGCCAGAGAATTACGATTGATCCGGTTACCCGTATCGAAGGACATTTACGC