Homologs in group_1713

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11945 FBDBKF_11945 100.0 Morganella morganii S1 yhjD inner membrane protein YhjD
EHELCC_14360 EHELCC_14360 100.0 Morganella morganii S2 yhjD inner membrane protein YhjD
NLDBIP_15455 NLDBIP_15455 100.0 Morganella morganii S4 yhjD inner membrane protein YhjD
LHKJJB_15155 LHKJJB_15155 100.0 Morganella morganii S3 yhjD inner membrane protein YhjD
F4V73_RS14710 F4V73_RS14710 90.0 Morganella psychrotolerans yhjD inner membrane protein YhjD
PMI_RS14020 PMI_RS14020 67.9 Proteus mirabilis HI4320 yhjD inner membrane protein YhjD

Distribution of the homologs in the orthogroup group_1713

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1713

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37642 5.33e-132 382 58 3 329 1 yhjD Inner membrane protein YhjD Escherichia coli (strain K12)
P45417 9e-123 358 67 0 284 3 Dda3937_02003 Uncharacterized protein Dda3937_02003 Dickeya dadantii (strain 3937)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_14275
Feature type CDS
Gene yhjD
Product inner membrane protein YhjD
Location 23995 - 24987 (strand: 1)
Length 993 (nucleotides) / 330 (amino acids)

Contig

Accession ZDB_693
Length 123756 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1713
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03631 Virulence factor BrkB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1295 Function unknown (S) S Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07058 membrane protein - -

Protein Sequence

MTRENDTPEDDNSTSSLKPLRKNFDEGLKQGKKALKWSVKAGNYIRNIPFIAHLIRTATRFNDRMGSPFGAAITYFSFLSMIPILMVSFAAAGYVLAFNPELLTRLIRGVANSISDPTLAATIERSIDTAIRQRATVGLTGLALALYSGVNWVGNLRMAIRAQYHDQWEPDIEVKENMFLRYLRDFLALIGLLVALVVTLSLTSIAGAAQARIVAFLGLDAVEWLRPAWTTIGLTISILANYLLFTWILWILPRMKLSRRSLLKGTLLAAIGFEILKTIMTWLLPNMAASPSGAAFGSVIGLMAFFYFFARLILFSAAWIATDIQKNKTA

Flanking regions ( +/- flanking 50bp)

AGTCCTGTAGTAAACTTAAACGGAATCAATTTCCGAACAAGCGAGGATACATGACCCGGGAAAACGACACACCGGAAGATGACAACAGCACATCATCATTAAAACCCCTGCGGAAGAATTTTGATGAAGGGTTAAAACAGGGGAAAAAAGCCCTGAAATGGAGTGTGAAAGCCGGAAATTATATCCGCAATATTCCGTTTATTGCCCATCTGATCCGCACCGCCACCCGCTTTAATGACAGAATGGGCAGCCCGTTCGGTGCAGCGATTACCTATTTCTCGTTTTTATCCATGATCCCGATTCTGATGGTCTCTTTTGCCGCCGCCGGTTATGTGCTGGCCTTTAATCCGGAACTGCTGACCAGACTTATCCGCGGTGTCGCCAACAGTATCAGCGACCCGACACTCGCCGCCACTATTGAGCGCAGTATTGATACCGCAATCCGCCAGCGTGCAACCGTCGGGTTAACCGGTCTGGCACTGGCACTCTATTCCGGGGTGAACTGGGTGGGCAATCTGCGGATGGCTATCCGGGCACAATACCACGACCAGTGGGAGCCGGATATTGAAGTGAAAGAGAATATGTTCCTGCGCTATCTGCGGGATTTCCTGGCGCTGATCGGCCTGCTGGTGGCGCTGGTGGTCACTCTCTCGCTGACCTCGATTGCCGGTGCCGCACAAGCCCGGATTGTCGCGTTTCTCGGCCTGGATGCTGTCGAATGGCTGCGTCCCGCCTGGACAACTATCGGCCTGACCATCTCCATCCTTGCCAACTATCTGCTGTTTACCTGGATTCTCTGGATCCTGCCGCGCATGAAGCTGAGCCGCCGCTCCCTGCTGAAAGGCACACTGCTGGCCGCGATCGGTTTTGAGATCCTGAAAACCATTATGACCTGGCTGCTGCCGAACATGGCGGCCTCCCCGTCCGGTGCTGCGTTTGGTTCGGTTATCGGCCTGATGGCCTTTTTCTATTTCTTCGCGCGCCTGATCCTCTTTTCAGCCGCCTGGATTGCGACTGACATCCAAAAAAATAAAACCGCCTGAGATTTTGGCTGCAATATGGTATGAATATCAGTCAGTGTAATGGATACTGA