Homologs in group_1753

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11945 FBDBKF_11945 100.0 Morganella morganii S1 yhjD inner membrane protein YhjD
NLDBIP_15455 NLDBIP_15455 100.0 Morganella morganii S4 yhjD inner membrane protein YhjD
LHKJJB_15155 LHKJJB_15155 100.0 Morganella morganii S3 yhjD inner membrane protein YhjD
HKOGLL_14275 HKOGLL_14275 100.0 Morganella morganii S5 yhjD inner membrane protein YhjD
F4V73_RS14710 F4V73_RS14710 90.0 Morganella psychrotolerans yhjD inner membrane protein YhjD
PMI_RS14020 PMI_RS14020 67.9 Proteus mirabilis HI4320 yhjD inner membrane protein YhjD

Distribution of the homologs in the orthogroup group_1753

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1753

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37642 5.33e-132 382 58 3 329 1 yhjD Inner membrane protein YhjD Escherichia coli (strain K12)
P45417 9e-123 358 67 0 284 3 Dda3937_02003 Uncharacterized protein Dda3937_02003 Dickeya dadantii (strain 3937)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_14360
Feature type CDS
Gene yhjD
Product inner membrane protein YhjD
Location 96381 - 97373 (strand: -1)
Length 993 (nucleotides) / 330 (amino acids)
In genomic island -

Contig

Accession ZDB_224
Length 134704 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1753
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03631 Virulence factor BrkB

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1295 Function unknown (S) S Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07058 membrane protein - -

Protein Sequence

MTRENDTPEDDNSTSSLKPLRKNFDEGLKQGKKALKWSVKAGNYIRNIPFIAHLIRTATRFNDRMGSPFGAAITYFSFLSMIPILMVSFAAAGYVLAFNPELLTRLIRGVANSISDPTLAATIERSIDTAIRQRATVGLTGLALALYSGVNWVGNLRMAIRAQYHDQWEPDIEVKENMFLRYLRDFLALIGLLVALVVTLSLTSIAGAAQARIVAFLGLDAVEWLRPAWTTIGLTISILANYLLFTWILWILPRMKLSRRSLLKGTLLAAIGFEILKTIMTWLLPNMAASPSGAAFGSVIGLMAFFYFFARLILFSAAWIATDIQKNKTA

Flanking regions ( +/- flanking 50bp)

AGTCCTGTAGTAAACTTAAACGGAATCAATTTCCGAACAAGCGAGGATACATGACCCGGGAAAACGACACACCGGAAGATGACAACAGCACATCATCATTAAAACCCCTGCGGAAGAATTTTGATGAAGGGTTAAAACAGGGGAAAAAAGCCCTGAAATGGAGTGTGAAAGCCGGAAATTATATCCGCAATATTCCGTTTATTGCCCATCTGATCCGCACCGCCACCCGCTTTAATGACAGAATGGGCAGCCCGTTCGGTGCAGCGATTACCTATTTCTCGTTTTTATCCATGATCCCGATTCTGATGGTCTCTTTTGCCGCCGCCGGTTATGTGCTGGCCTTTAATCCGGAACTGCTGACCAGACTTATCCGCGGTGTCGCCAACAGTATCAGCGACCCGACACTCGCCGCCACTATTGAGCGCAGTATTGATACCGCAATCCGCCAGCGTGCAACCGTCGGGTTAACCGGTCTGGCACTGGCACTCTATTCCGGGGTGAACTGGGTGGGCAATCTGCGGATGGCTATCCGGGCACAATACCACGACCAGTGGGAGCCGGATATTGAAGTGAAAGAGAATATGTTCCTGCGCTATCTGCGGGATTTCCTGGCGCTGATCGGCCTGCTGGTGGCGCTGGTGGTCACTCTCTCGCTGACCTCGATTGCCGGTGCCGCACAAGCCCGGATTGTCGCGTTTCTCGGCCTGGATGCTGTCGAATGGCTGCGTCCCGCCTGGACAACTATCGGCCTGACCATCTCCATCCTTGCCAACTATCTGCTGTTTACCTGGATTCTCTGGATCCTGCCGCGCATGAAGCTGAGCCGCCGCTCCCTGCTGAAAGGCACACTGCTGGCCGCGATCGGTTTTGAGATCCTGAAAACCATTATGACCTGGCTGCTGCCGAACATGGCGGCCTCCCCGTCCGGTGCTGCGTTTGGTTCGGTTATCGGCCTGATGGCCTTTTTCTATTTCTTCGCGCGCCTGATCCTCTTTTCAGCCGCCTGGATTGCGACTGACATCCAAAAAAATAAAACCGCCTGAGATTTTGGCTGCAATATGGTATGAATATCAGTCAGTGTAATGGATACTGA