COG4791


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4791, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Type III secretory pathway, EscT/YscT component
Function(s) descr. Intracellular trafficking, secretion, and vesicular transport (U)

Occurence in the database

COG4791 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_314 FBDBKF_09300 92732 93493 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S1
1 group_314 EHELCC_10110 52611 53372 1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S2
2 group_314 NLDBIP_10455 30882 31643 1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S4
3 group_314 LHKJJB_10900 159885 160646 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S3
4 group_314 HKOGLL_13960 93186 93947 -1 sctT type III secretion system export apparatus subunit SctT Morganella morganii S5
5 group_314 F4V73_RS08345 1728193 1728978 1 sctT type III secretion system export apparatus subunit SctT Morganella psychrotolerans
6 group_314 F4V73_RS10665 261974 262735 1 sctT type III secretion system export apparatus subunit SctT Morganella psychrotolerans
7 group_314 PMI_RS13235 2938842 2939615 -1 sctT type III secretion system export apparatus subunit SctT Proteus mirabilis HI4320