Homologs in group_1556

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10080 FBDBKF_10080 100.0 Morganella morganii S1 mrdA peptidoglycan DD-transpeptidase MrdA
EHELCC_04880 EHELCC_04880 100.0 Morganella morganii S2 mrdA peptidoglycan DD-transpeptidase MrdA
NLDBIP_04880 NLDBIP_04880 100.0 Morganella morganii S4 mrdA peptidoglycan DD-transpeptidase MrdA
LHKJJB_13750 LHKJJB_13750 100.0 Morganella morganii S3 mrdA peptidoglycan DD-transpeptidase MrdA
F4V73_RS00255 F4V73_RS00255 94.4 Morganella psychrotolerans mrdA peptidoglycan DD-transpeptidase MrdA
PMI_RS02100 PMI_RS02100 81.9 Proteus mirabilis HI4320 mrdA peptidoglycan DD-transpeptidase MrdA

Distribution of the homologs in the orthogroup group_1556

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1556

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD65 0.0 969 73 1 630 1 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli (strain K12)
P0AD66 0.0 969 73 1 630 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD67 0.0 969 73 1 630 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli O157:H7
P44469 0.0 709 58 4 608 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0CL14 0.0 684 54 3 623 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WGF1 0.0 684 54 3 623 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Salmonella typhimurium (strain SL1344)
Q03524 3.64e-42 165 25 22 620 1 spoVD Stage V sporulation protein D Bacillus subtilis (strain 168)
P42971 6.13e-41 162 29 16 447 1 pbpC Penicillin-binding protein 3 Bacillus subtilis (strain 168)
P54488 5.87e-34 141 25 17 598 1 pbpA Penicillin-binding protein 2A Bacillus subtilis (strain 168)
P07944 1.17e-32 137 28 19 542 2 pbp Beta-lactam-inducible penicillin-binding protein Staphylococcus aureus
G3XD46 4.43e-31 131 24 21 633 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q07868 3.44e-29 127 23 18 561 1 pbpB Penicillin-binding protein 2B Bacillus subtilis (strain 168)
P0A0U9 2.43e-27 120 25 23 625 3 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P0A0U8 2.43e-27 120 25 23 625 3 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P08149 5.69e-27 119 25 23 625 1 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria gonorrhoeae
Q89AQ0 6.93e-27 119 25 17 478 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P0AD68 1.93e-26 117 23 22 619 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Escherichia coli (strain K12)
P0AD69 1.93e-26 117 23 22 619 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Escherichia coli O157:H7
Q9I1K1 3.81e-25 113 24 21 586 1 pbpC Probable peptidoglycan D,D-transpeptidase PbpC Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57317 5.38e-25 113 21 22 655 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O85297 1.78e-23 108 22 23 630 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P45059 8.56e-23 106 24 17 501 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0R022 1.72e-21 102 22 25 677 1 pbpB Penicillin-binding protein PbpB Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P0A3M6 3.03e-21 102 24 22 512 1 penA Penicillin-binding protein 2B Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A3M5 3.03e-21 102 24 22 512 3 penA Penicillin-binding protein 2B Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
A0A0H2ZQ75 3.03e-21 102 24 22 512 3 penA Penicillin-binding protein 2B Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
Q9MUV9 8.59e-21 100 22 21 633 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Mesostigma viride
L0T911 1.09e-18 94 23 26 672 1 pbpB Penicillin-binding protein PbpB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0QNG3 7.64e-17 87 25 13 402 3 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WKD1 9.79e-17 87 26 13 368 1 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKD0 9.79e-17 87 26 13 368 3 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A2CI41 1.65e-14 80 22 11 432 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Chlorokybus atmophyticus
P14677 9.76e-14 78 21 16 529 1 pbpX Penicillin-binding protein 2x Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P59676 1.74e-13 77 21 16 529 1 pbpX Penicillin-binding protein 2X Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
Q796K8 3e-13 76 24 17 495 1 pbpH Penicillin-binding protein H Bacillus subtilis (strain 168)
P16873 1.19e-12 73 24 14 433 3 penA Probable peptidoglycan D,D-transpeptidase PenA (Fragment) Neisseria flavescens
B8H0A0 1.18e-11 71 24 14 423 1 ftsI Probable peptidoglycan D,D-transpeptidase FtsI Caulobacter vibrioides (strain NA1000 / CB15N)
Q9TL36 8.98e-11 68 21 19 509 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Nephroselmis olivacea
P31776 0.000165 48 23 9 273 1 mrcA Penicillin-binding protein 1A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12785
Feature type CDS
Gene mrdA
Product peptidoglycan DD-transpeptidase MrdA
Location 108265 - 110196 (strand: 1)
Length 1932 (nucleotides) / 643 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1556
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00905 Penicillin binding protein transpeptidase domain
PF03717 Penicillin-binding Protein dimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0768 Cell cycle control, cell division, chromosome partitioning (D)
Cell wall/membrane/envelope biogenesis (M)		 DM Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05515 penicillin-binding protein 2 [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways
beta-Lactam resistance		 -

Protein Sequence

MPGLNAPDGDKKKHKQRMDFRDYSAESALFIRRAVVAFIGIVILSAVLVVNLYHLQINRHEDYQTRSNDNRIKLVPIPPSRGLIYDRKGTLLAENRTIYQLEIVPEKVTDLPDVLNELREIVDLTDEDIANYEKERRRSRRFTSIPLKTPLNQIQVARFSVNQYRFPGLEIKGYQRRFYPYGSALTHVIGYVAKINDKDVERLDKDGLLPNYAATHDIGKLGIERYYESVLHGKTGYEEVEVNSRGRVIRQLHEQAPQAGKDIYLTIDLELQMYIEKLLTTSRAAVVVSDPRNGEILALVSNPSYDPNLFVNGISGPDYRGLLNNPDRPLINRTTQGLYPPASTVKPFISVAALSEKVITRNTTIFDPGWWQLPGSEKRYRDWKRYGHGNLNVVKSIIESADTFFYQVAYDMGIDRLSAWMTRFGYGEYSGIDLMEEYNGVMPTREWKLRRYKKQWYQGDTIPVGIGQGYWTSTPIQMSKALNTLINDGVVKTPHLLLGTKEGGGMLPYEQKEYIAIGDIHSGYWELAKSGMFGVANAPNGTGRKFFAGTPYKAAAKSGTAQVFSYETYNASKLAERLRDHKLMIAYAPYDNPKVAVTIILENGGAGPAVGTLVRQILDHVLLGDNNTVLPDAPPSPPGSETE

Flanking regions ( +/- flanking 50bp)

CGTGCCTGGAGTATTACTGCCAATCATCCGTATCACAGGGAATAACCGCAGTGCCCGGTCTGAACGCGCCTGACGGCGATAAGAAAAAACACAAGCAACGGATGGACTTCCGCGATTACAGCGCGGAATCCGCCCTGTTTATCCGCCGTGCGGTGGTTGCATTTATCGGTATTGTTATTTTATCTGCCGTACTGGTGGTGAATCTCTATCATCTCCAGATTAACCGCCATGAAGATTATCAGACCCGTTCCAATGATAACCGGATCAAACTGGTCCCTATTCCGCCGAGCCGTGGTCTGATTTATGACCGCAAAGGTACCCTGCTGGCGGAAAACAGAACCATTTATCAGCTCGAAATCGTGCCGGAGAAAGTCACTGACCTGCCGGACGTACTGAATGAGCTGCGCGAGATTGTCGATCTGACCGATGAAGACATCGCGAATTATGAAAAAGAGCGCCGCCGTTCGCGCCGCTTTACCTCTATTCCGCTGAAAACCCCGCTCAACCAGATTCAGGTGGCGCGGTTTTCGGTAAATCAGTACCGCTTCCCGGGACTGGAAATCAAAGGCTATCAGCGCCGTTTCTATCCTTACGGCTCCGCCCTGACCCATGTTATTGGTTATGTGGCAAAAATTAACGATAAAGATGTCGAGCGCCTGGATAAAGACGGTCTGTTGCCGAACTATGCCGCCACTCATGATATCGGTAAGCTGGGTATTGAGCGCTATTATGAATCCGTCCTGCACGGCAAAACCGGCTATGAGGAAGTGGAAGTCAACAGCCGCGGCCGCGTGATCCGCCAGTTACACGAGCAGGCACCACAGGCCGGGAAAGATATCTATCTGACAATTGATCTCGAATTGCAGATGTATATCGAAAAACTGCTGACCACCAGCCGTGCAGCTGTTGTGGTGAGTGATCCGCGCAACGGCGAGATTCTGGCACTGGTGTCCAACCCGAGTTATGACCCGAACCTGTTTGTGAACGGTATTTCCGGCCCGGATTACCGGGGCCTGCTCAATAACCCGGATCGCCCGCTGATCAACCGCACCACCCAGGGGCTCTATCCGCCGGCATCCACTGTGAAACCGTTTATTTCAGTGGCGGCACTCAGCGAAAAAGTGATCACCCGTAACACCACGATTTTTGACCCCGGCTGGTGGCAGCTGCCCGGCTCAGAAAAACGTTACCGCGACTGGAAACGCTATGGTCACGGCAACCTGAACGTAGTGAAATCGATTATTGAATCAGCGGATACCTTCTTCTATCAGGTGGCGTATGACATGGGGATCGACCGTCTGTCCGCCTGGATGACCCGCTTCGGTTACGGCGAATATTCCGGTATCGATCTGATGGAAGAGTACAACGGTGTGATGCCGACCCGTGAATGGAAACTGCGGCGCTATAAGAAACAGTGGTATCAGGGCGATACCATCCCGGTCGGGATCGGCCAGGGATACTGGACATCAACACCGATCCAGATGTCAAAAGCCCTTAATACCCTGATAAATGATGGTGTGGTGAAAACACCGCACCTGCTGCTCGGCACCAAAGAAGGCGGCGGTATGCTGCCGTATGAGCAGAAAGAATATATTGCTATCGGTGATATTCATTCCGGATACTGGGAACTGGCCAAGTCCGGGATGTTCGGCGTGGCCAACGCACCGAACGGCACCGGCCGCAAATTCTTTGCCGGTACGCCGTACAAAGCAGCCGCCAAATCCGGTACAGCACAGGTGTTCAGCTACGAAACCTATAACGCCAGCAAACTGGCGGAACGCCTGCGCGACCATAAATTAATGATTGCTTACGCACCGTACGATAACCCGAAAGTGGCGGTGACCATTATTCTGGAAAACGGCGGTGCAGGCCCGGCAGTCGGTACTCTGGTCCGCCAGATCCTTGACCACGTCCTGCTGGGTGATAACAACACGGTACTGCCGGATGCTCCGCCATCACCGCCCGGCAGTGAAACAGAGTAATGCCCATGACTGATAATCCGCGCAAAGTATCCCTGATGACCCGCATGCAC