Homologs in group_1527

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09860 FBDBKF_09860 100.0 Morganella morganii S1 nIF3 type 2 GTP cyclohydrolase I
EHELCC_04660 EHELCC_04660 100.0 Morganella morganii S2 nIF3 type 2 GTP cyclohydrolase I
NLDBIP_04660 NLDBIP_04660 100.0 Morganella morganii S4 nIF3 type 2 GTP cyclohydrolase I
LHKJJB_13970 LHKJJB_13970 100.0 Morganella morganii S3 nIF3 type 2 GTP cyclohydrolase I
F4V73_RS00485 F4V73_RS00485 85.8 Morganella psychrotolerans - type 2 GTP cyclohydrolase I
PMI_RS02735 PMI_RS02735 72.5 Proteus mirabilis HI4320 - type 2 GTP cyclohydrolase I

Distribution of the homologs in the orthogroup group_1527

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1527

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67270 5.98e-125 357 66 0 247 3 ybgI GTP cyclohydrolase 1 type 2 homolog Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67271 5.98e-125 357 66 0 247 3 ybgI GTP cyclohydrolase 1 type 2 homolog Salmonella typhi
Q8ZD91 1.97e-124 356 65 0 247 3 YPO2697 GTP cyclohydrolase 1 type 2 homolog Yersinia pestis
P0AFP6 1.8e-123 353 66 0 247 1 ybgI GTP cyclohydrolase 1 type 2 homolog Escherichia coli (strain K12)
P0AFP7 1.8e-123 353 66 0 247 3 ybgI GTP cyclohydrolase 1 type 2 homolog Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFP8 1.8e-123 353 66 0 247 3 ybgI GTP cyclohydrolase 1 type 2 homolog Escherichia coli O157:H7
Q57354 5.28e-106 309 57 3 254 1 HI_0105 GTP cyclohydrolase 1 type 2 homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KQA7 1.23e-105 308 58 2 251 3 VC_2093 GTP cyclohydrolase 1 type 2 homolog Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9CP72 2.67e-105 308 59 3 254 3 PM0183 GTP cyclohydrolase 1 type 2 homolog Pasteurella multocida (strain Pm70)
P57387 2.45e-96 285 49 0 247 3 BU301 GTP cyclohydrolase 1 type 2 homolog Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9N4 8.52e-91 271 46 0 247 3 BUsg_291 GTP cyclohydrolase 1 type 2 homolog Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89AJ8 2.36e-88 265 45 0 246 3 bbp_279 GTP cyclohydrolase 1 type 2 homolog Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q9HVX2 5.31e-86 259 51 3 252 3 PA4445 GTP cyclohydrolase 1 type 2 homolog Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8XVA0 5.81e-78 238 48 2 248 3 RSc2931 GTP cyclohydrolase 1 type 2 homolog Ralstonia nicotianae (strain ATCC BAA-1114 / GMI1000)
Q9JXG9 2.53e-70 219 47 2 239 3 NMB2054 GTP cyclohydrolase 1 type 2 homolog Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9JWG6 1.03e-69 217 47 2 239 3 NMA0382 GTP cyclohydrolase 1 type 2 homolog Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
P45371 1.14e-67 212 47 2 246 3 Alvin_0067 GTP cyclohydrolase 1 type 2 homolog Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
Q9PKS8 2.35e-44 152 34 2 250 3 TC_0384 GTP cyclohydrolase 1 type 2 homolog Chlamydia muridarum (strain MoPn / Nigg)
Q9UYT3 7.68e-42 146 32 4 253 3 PYRAB14240 GTP cyclohydrolase 1 type 2 homolog Pyrococcus abyssi (strain GE5 / Orsay)
Q9Z946 8.06e-42 146 32 2 250 3 CPn_0137 GTP cyclohydrolase 1 type 2 homolog Chlamydia pneumoniae
O84110 8.97e-42 145 33 2 250 3 CT_108 GTP cyclohydrolase 1 type 2 homolog Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
O28497 7.69e-41 143 32 5 256 3 AF_1777 GTP cyclohydrolase 1 type 2 homolog Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O58361 3.18e-40 142 32 3 250 3 PH0627 GTP cyclohydrolase 1 type 2 homolog Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q9HP80 2.09e-36 132 35 6 256 3 VNG_1766C GTP cyclohydrolase 1 type 2 homolog Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Q9RY41 4.05e-32 121 32 3 246 3 DR_0110 GTP cyclohydrolase 1 type 2 homolog Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
O83942 4.3e-31 119 31 7 267 3 TP_0977 GTP cyclohydrolase 1 type 2 homolog Treponema pallidum (strain Nichols)
O51424 1.77e-20 90 27 8 247 3 BB_0468 GTP cyclohydrolase 1 type 2 homolog Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
Q8XIV9 1.84e-13 71 24 5 226 3 CPE2004 GTP cyclohydrolase 1 type 2 homolog Clostridium perfringens (strain 13 / Type A)
Q9L012 2.67e-10 62 27 6 204 3 SCO2301 GTP cyclohydrolase 1 type 2 homolog Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q97JI0 5.98e-10 61 23 7 239 3 CA_C1303 GTP cyclohydrolase 1 type 2 homolog Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
Q8YS75 1.99e-09 60 25 6 221 3 alr3216 GTP cyclohydrolase 1 type 2 homolog Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q97PK0 5.58e-09 58 23 6 222 1 SP_1609 GTP cyclohydrolase 1 type 2 homolog Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
Q58337 1.71e-08 57 22 7 244 1 MJ0927 GTP cyclohydrolase 1 type 2 homolog Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9KD39 2.86e-06 51 29 4 107 3 BH1380 GTP cyclohydrolase 1 type 2 homolog Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P53081 4.58e-06 50 24 9 226 1 NIF3 NGG1-interacting factor 3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O94404 6.88e-06 49 24 8 240 3 SPCC126.12 Protein NIF3 homolog Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q5XCH0 1.07e-05 48 19 4 220 3 M6_Spy0758 GTP cyclohydrolase 1 type 2 homolog Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394)
P0DG85 2.84e-05 47 19 4 220 3 SPs1208 GTP cyclohydrolase 1 type 2 homolog Streptococcus pyogenes serotype M3 (strain SSI-1)
P67276 2.84e-05 47 19 4 220 3 spyM18_0988 GTP cyclohydrolase 1 type 2 homolog Streptococcus pyogenes serotype M18 (strain MGAS8232)
P0DG84 2.84e-05 47 19 4 220 3 SpyM3_0644 GTP cyclohydrolase 1 type 2 homolog Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315)
P67274 2.84e-05 47 19 4 220 3 SPy_0931 GTP cyclohydrolase 1 type 2 homolog Streptococcus pyogenes serotype M1
Q9NK57 6.54e-05 46 21 9 246 1 anon-35F/36A NIF3-like protein 1 Drosophila melanogaster
Q92BQ8 0.000754 43 25 4 122 3 lin1489 GTP cyclohydrolase 1 type 2 homolog Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12565
Feature type CDS
Gene nIF3
Product type 2 GTP cyclohydrolase I
Location 70004 - 70747 (strand: -1)
Length 744 (nucleotides) / 247 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1527
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01784 Duf34/NIF3 (NGG1p interacting factor 3)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0327 Coenzyme transport and metabolism (H) H Putative GTP cyclohydrolase 1 type 2, NIF3 family

Protein Sequence

MNHIELEQIINEKLAVQDFQDYAPNGLQVEGREQVQRVVTGVTACQALLDEAVRLNADAVLVHHGYFWKNEPVSIRGMKQRRIKTLLCNDMNLYGYHLPLDTHPELGNNAKLAQLMGVTVTGQVDPLLPCGEFAQPVSGEELVQRLQQGLDREILHCGDNAPAQIKKLGWCTGGGQSFIQAAADAGLDGFVTGEVSEQTIHIARECGMHFFAAGHHATERGGIRALGEWLQKTHGLDVIFVDIPNPA

Flanking regions ( +/- flanking 50bp)

GGCGGGCAGGGAAGGTATGGTAAATCTATCCGCACGGACAGGAAAAATGTATGAATCATATTGAATTAGAACAGATTATTAATGAAAAGCTGGCAGTACAGGATTTTCAGGATTATGCCCCGAACGGTCTGCAGGTTGAAGGACGTGAACAGGTTCAGCGCGTGGTGACCGGCGTGACCGCCTGTCAGGCATTACTGGATGAAGCGGTGAGACTGAATGCGGACGCGGTGCTGGTGCATCACGGCTATTTCTGGAAAAACGAGCCGGTCAGTATCCGGGGCATGAAGCAGCGCCGGATCAAAACACTGCTGTGTAACGATATGAATTTATACGGTTATCATCTGCCGCTGGATACCCATCCGGAACTGGGAAATAACGCGAAACTGGCGCAACTGATGGGGGTCACGGTCACCGGGCAGGTTGATCCGCTGCTTCCGTGCGGTGAGTTCGCGCAACCGGTCAGCGGCGAGGAACTGGTGCAGCGTTTACAGCAGGGGCTGGATAGGGAGATTCTGCATTGCGGGGATAACGCGCCTGCTCAGATTAAAAAACTGGGCTGGTGTACCGGCGGCGGTCAGAGTTTTATTCAGGCAGCCGCAGATGCGGGGCTTGACGGCTTTGTGACCGGCGAGGTATCAGAGCAGACAATCCATATCGCCCGTGAATGCGGGATGCACTTCTTTGCCGCCGGTCACCATGCCACCGAGCGCGGCGGGATCCGTGCTCTGGGTGAATGGCTGCAGAAAACGCACGGGCTGGATGTGATTTTTGTGGATATCCCGAACCCGGCATAACGGGTAACAGGAAAAGCCGGTCAGAAGACCGGCTTTTTATTATGCGGTTC