Homologs in group_1480

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09555 FBDBKF_09555 100.0 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_04355 EHELCC_04355 100.0 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_04355 NLDBIP_04355 100.0 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14275 LHKJJB_14275 100.0 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
F4V73_RS00810 F4V73_RS00810 91.3 Morganella psychrotolerans - ABC transporter permease
PMI_RS03035 PMI_RS03035 77.2 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1480

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1480

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ2 0.0 548 70 1 378 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 0.0 548 70 1 378 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 0.0 548 70 1 378 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 2.68e-41 158 32 5 337 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AFQ1 7.46e-40 148 27 5 355 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 7.46e-40 148 27 5 355 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 7.46e-40 148 27 5 355 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P0AGH2 1.51e-12 71 24 9 380 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 1.51e-12 71 24 9 380 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
Q8T674 1.42e-10 66 20 8 379 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum
P94442 2.96e-09 61 22 13 393 1 lnrN Linearmycin resistance permease protein LnrN Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_12260
Feature type CDS
Gene yadH
Product ABC-type multidrug transport system, permease component
Location 10618 - 11754 (strand: 1)
Length 1137 (nucleotides) / 378 (amino acids)

Contig

Accession ZDB_690
Length 144397 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1480
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25181 drug efflux transport system permease protein - -

Protein Sequence

MSTPSGFSWRRLRALCIKESKQIVRDPSSALIAIVIPLILLFIFGYGINLDSSKLRLGILVNQQSEPARELIHAFTGSPFIDATLSDNRRELIDKLQAGHIRGIVVIPADLDKRLARQGDIAQIQVITDGSEPNTANFVQGYASGIWQIWQQQRAQDRGISSEPPIDVRLRYWFNPAAISQHFIIPGAISIIITVVGAILTSLVVAREWERGTMEALLSTQVTKTELLLSKLLPYQVLGSFVMVLCMVVTVYVLDVPYHGSLWLLALVTSLYLATALGMGLLISTVTRNQFNAAMISLNAAFLPAIMLSGFVFEIDSMPVAIQVVTYVIPARYFVESLQTLFLAGNIMPVIISNLVLLILSALVFIGLTALKTRRRLD

Flanking regions ( +/- flanking 50bp)

ATCGGGCTGGTCGAGGAGTATGACAAAGAAAGCGCACAGGAGGCCGCATCATGAGCACACCTTCCGGTTTTTCATGGCGCCGTCTGCGGGCGCTGTGCATCAAAGAGAGCAAACAGATTGTCCGCGATCCGTCGAGTGCCCTGATCGCAATTGTGATCCCGCTGATTCTGTTATTTATTTTCGGTTACGGCATCAATCTGGATTCATCAAAACTGCGCCTCGGGATTCTGGTGAATCAGCAGAGCGAACCGGCGCGGGAACTGATCCACGCCTTTACCGGCTCTCCGTTTATCGATGCCACCCTCAGTGATAACCGCCGTGAATTAATTGATAAACTTCAGGCGGGGCATATCCGCGGTATTGTGGTGATCCCGGCGGATTTGGACAAACGTCTGGCCCGTCAGGGCGATATCGCACAGATTCAGGTGATTACGGACGGCAGTGAACCTAATACTGCCAACTTTGTGCAGGGCTATGCCAGCGGTATCTGGCAGATCTGGCAGCAGCAGCGGGCACAGGATCGGGGGATCAGCAGTGAACCGCCTATTGATGTCCGGTTGCGCTACTGGTTTAACCCGGCGGCCATCAGCCAGCATTTTATTATACCGGGCGCTATCAGCATCATTATTACCGTGGTCGGCGCTATCCTGACCTCACTGGTGGTGGCGCGGGAATGGGAACGCGGCACCATGGAAGCCCTGCTCTCAACGCAGGTGACCAAAACGGAACTGCTGCTCTCCAAACTGCTGCCGTATCAGGTGCTCGGCAGCTTTGTCATGGTGCTGTGTATGGTGGTGACCGTATATGTGCTGGATGTGCCGTACCACGGCTCGCTGTGGCTTCTGGCCCTCGTGACCTCCCTCTATCTCGCCACCGCGCTTGGTATGGGGCTCCTGATTTCCACCGTGACCCGCAATCAGTTTAACGCCGCCATGATTTCACTGAACGCCGCATTTCTGCCTGCGATTATGCTGTCCGGCTTTGTGTTTGAAATTGACAGTATGCCGGTGGCGATACAGGTGGTAACTTATGTGATCCCGGCGCGCTACTTTGTGGAAAGCCTGCAGACACTGTTCCTGGCGGGTAATATTATGCCGGTGATTATCAGTAATCTGGTGTTGCTGATCCTGTCAGCGCTTGTGTTTATCGGCCTGACCGCCCTGAAAACCCGCCGCCGGCTTGATTAAGGAGACTGCCATGTTTCATCGGATACTCACCTTAATTATCAAAGAGCTGC