Homologs in group_1480

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09555 FBDBKF_09555 77.2 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_04355 EHELCC_04355 77.2 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_04355 NLDBIP_04355 77.2 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_14275 LHKJJB_14275 77.2 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_12260 HKOGLL_12260 77.2 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS00810 F4V73_RS00810 78.0 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_1480

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1480

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFQ2 0.0 542 71 0 371 1 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli (strain K12)
P0AFQ3 0.0 542 71 0 371 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFQ4 0.0 542 71 0 371 3 ybhS Probable multidrug ABC transporter permease YbhS Escherichia coli O157:H7
P37624 2.24e-42 161 29 6 380 1 rbbA Ribosome-associated ATPase Escherichia coli (strain K12)
P0AFQ1 3.22e-36 138 26 6 369 3 ybhR Probable multidrug ABC transporter permease YbhR Shigella flexneri
P0AFP9 3.22e-36 138 26 6 369 1 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli (strain K12)
P0AFQ0 3.22e-36 138 26 6 369 3 ybhR Probable multidrug ABC transporter permease YbhR Escherichia coli O157:H7
P94442 3.16e-13 73 23 12 393 1 lnrN Linearmycin resistance permease protein LnrN Bacillus subtilis (strain 168)
P0AGH2 4.53e-12 70 26 13 356 3 yhhJ Inner membrane transport permease YhhJ Shigella flexneri
P0AGH1 4.53e-12 70 26 13 356 1 yhhJ Inner membrane transport permease YhhJ Escherichia coli (strain K12)
Q8T674 1.01e-07 57 19 3 260 3 abcG20 ABC transporter G family member 20 Dictyostelium discoideum

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS03035
Feature type CDS
Gene -
Product ABC transporter permease
Location 668187 - 669338 (strand: -1)
Length 1152 (nucleotides) / 383 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1480
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF12698 ABC-2 family transporter protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K25181 drug efflux transport system permease protein - -

Protein Sequence

MSNSSQSSPAHFSWRRLYALCLKETKQITRDPSSALIAIVIPLTLLFIFGYGINLDSSKLNIGILTNQQSQPAQELVYTFTNSPYINATISDNRQLLIDKMQAGEIRGIVVIPVDFAQLLARQDSKAPIQVITDGSEPNTANFVQAYTKGVWQIWLQQQALSQGIQQQPLIEIEPRYWFNPAAISQHYIIPGAVTIIITVVGAILTSLVIAREWERGTMEALLSTQITRTELLLSKLIPYQVLGSFVMVLCMLVTVYILGVPYRGSLWILAGITSLFLATALGMGLLISTLTRNQFNAAMISLNAAFLPAVMLSGFVFEIDSMPFFIQVVTYFIPARYFVSSLQTLFLAGDIPMILMLDMWLLIVSAIFFIGLTALATRRRLD

Flanking regions ( +/- flanking 50bp)

GGATTACGATAAAAAACTTGAACAAGAAAATCACCAAGGGAGCGAAAAACATGAGTAATTCGTCTCAATCATCACCTGCACATTTTTCTTGGCGACGTTTATATGCTCTTTGTTTAAAAGAGACTAAACAAATCACCCGTGATCCCAGTAGCGCGCTTATTGCTATTGTTATCCCCCTCACCTTACTGTTTATTTTCGGTTACGGTATCAACTTAGATTCAAGCAAATTAAATATTGGTATATTAACTAACCAACAAAGCCAACCGGCACAAGAGTTAGTGTATACTTTTACCAACTCTCCCTATATTAACGCCACCATCAGCGATAATCGCCAATTGCTTATCGATAAAATGCAAGCCGGAGAAATTCGTGGCATTGTGGTTATTCCTGTCGACTTTGCGCAATTATTAGCCCGACAAGATAGCAAAGCTCCCATTCAAGTGATCACCGATGGTAGTGAGCCAAATACCGCAAACTTTGTACAAGCCTATACCAAAGGGGTTTGGCAAATCTGGTTACAGCAACAAGCTTTAAGTCAAGGCATTCAGCAGCAACCATTAATTGAAATTGAGCCAAGGTATTGGTTTAACCCTGCCGCCATCAGCCAACACTATATTATTCCCGGTGCCGTCACTATTATCATCACCGTGGTTGGGGCTATTCTAACCTCTTTGGTTATCGCTCGAGAATGGGAGCGTGGCACCATGGAAGCCTTACTCTCAACCCAAATTACACGCACAGAATTACTGCTTTCCAAGCTTATTCCTTATCAAGTATTAGGCAGTTTTGTTATGGTGCTATGTATGTTGGTCACTGTCTATATATTAGGCGTGCCTTACCGTGGCTCATTATGGATTTTAGCGGGTATTACTTCACTATTTTTAGCCACTGCACTAGGTATGGGGCTATTGATCTCCACCCTAACTCGCAATCAATTTAACGCGGCAATGATCTCACTTAATGCGGCTTTTTTACCTGCGGTGATGTTATCAGGCTTTGTGTTTGAAATTGATAGCATGCCATTTTTTATTCAAGTAGTGACCTATTTTATTCCCGCACGTTATTTTGTTAGTAGCTTACAGACACTCTTCTTAGCGGGAGATATTCCGATGATCTTAATGCTAGATATGTGGCTATTAATTGTTTCAGCCATCTTTTTTATTGGCTTAACGGCGTTAGCAACACGTCGTCGCTTAGATTAATAAGGGAGAGTTTTTATGTTTCATCGTCTTCTCACCCTGATAATGAAAGA